Safb1 - OmicsDI

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Transcriptomics (89)
Genomics (38)
Unknown (18)
Proteomics (9)
Other (1)
Metabolomics (1)

Organisms

Mus musculus (78)
Homo sapiens (21)
Drosophila melanogaster (3)
Podospora anserina (2)
Cryptosporidium andersoni (2)
Cucumis sativus (2)
Schizophyllum commune H4-8 (2)
Mycobacterium tuberculosis SP7 (2)
Salmonella enterica subsp. enterica serovar Typhimurium str. T000240 (2)
Oryza sativa Japonica Group (2)
Rabbit calicivirus (2)
Crotalus durissus terrificus (2)
Eriocheir sinensis (2)
Candidatus Endoriftia persephonae (2)
Mycobacterium tuberculosis SP10 (2)
Mycobacterium tuberculosis SP13 (2)
Cotesia typhae (2)
Mycobacterium tuberculosis SP22 (2)
Cepaea nemoralis (2)
Geobacillus kaustophilus HTA426 (2)
Enterobacter ludwigii (2)
mouse gut metagenome (1)
Schizosaccharomyces pombe (1)
Cryptococcus neoformans (1)
Triticum aestivum (1)
Gallus gallus (1)
Candida albicans (1)
Rattus norvegicus (1)
Sus scrofa (1)
Arabidopsis thaliana (1)

Organisms

Homo sapiens (10)
Mus musculus (4)

Repository

biostudies-arrayexpress (96)
ENA (18)
geo (8)
EGA (6)
MassIVE (4)
jPOST (3)
pride (2)
MetaboLights (1)

Tissue

Colon (1)
Cell culture (1)
Epithelial cell (1)

Disease

Breast cancer (1)

Technology Type

Mass Spectrometry (2)
Mass spectrometry assay (1)
Bottom-up proteomics (1)
Data-dependent acquisition (1)
Data-independent acquisition (1)
Shotgun proteomics (1)

Instrument Platform

Illumina HiSeq 2500 (6)
Illumina NovaSeq 6000 (5)
Illumina HiSeq 2000 (4)
NextSeq 550 (3)
Illumina HiSeq 4000 (3)
Orbitrap Fusion Lumos (2)
Nanodrop 2000c spectrophotometer (1)
Complete Genomics (1)
Illumina NovaSeq X (1)
NextSeq 2000 (1)
Illumina TruSeq® Stranded mRNA Library Preparation Kit (Illumina) (1)
Illumina HiSeq 3000 (1)
NextSeq 500 (1)
LTQ Orbitrap Elite (1)
Q Exactive (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - positive (1)

Publication Date

2012 (18)
2010 (14)
2015 (12)
2014 (12)
2013 (8)
2011 (7)
2026 (6)
2023 (6)
2021 (5)
2025 (4)
2024 (4)
2020 (4)
2016 (4)
2018 (3)
2008 (3)
2022 (2)
2019 (1)
2017 (1)

Metabolite Name

Thr-Tyr-Asp-Arg-Asn (1)
[(2R,3S,4S,5R)-6-[(2R,3R,4S,5S,6R)-4,5-dihydroxy-6-[[(E)-2-methylbut-2-enoyl]oxymethyl]-3-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxy-5-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxyoxan-2-yl]methyl (E)-2-methylbut-2-enoate (1)
[Met5,Lys6] alpha-Neo-Endorphin (1-6) (1)
2,4,5,6(1H,3H)-Pyrimidinetetrone,5-[2-(2-chlorophenyl)hydrazone] (1)
Bullatalicin (1)
2-docosanamidoethanesulfonic acid (1)
2,6,10,14-Tetramethyl-16-(5-methyl-3,6-dioxo-1,4-cyclohexadiene-1-yl)-2-hydroxy-6,10,14-hexadecatriene-3-one (1)
[(2S)-2-[9-(3,4-dimethyl-5-propylfuran-2-yl)nonanoyloxy]-3-hydroxypropyl] 11-(3,4-dimethyl-5-propylfuran-2-yl)undecanoate (1)
(2S,3R,4R,4aR,6aR,6bS,8aS,14bR)-2,3-dihydroxy-4,6a,6b,11,11,14b-hexamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicene-4,8a-dicarboxylate (1)
[(2S)-2-hexadecanoyloxy-3-[(2R,3R,4S,5R,6R)-3,4,5-trihydroxy-6-[[(2R,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxymethyl]oxan-2-yl]oxypropyl] (Z)-octadec-9-enoate (1)
[10,13-dimethyl-17-(6-methylheptan-2-yl)-2,3,4,7,8,9,11,12,14,15,16,17-dodecahydro-1H-cyclopenta[a]phenanthren-3-yl] 3-(3-methyl-5-pentylfuran-2-yl)propanoate (1)
(2R,3R,4R,5R)-2-[(9R)-9,13-dihydroxytridecyl]-5-(hydroxymethyl)pyrrolidine-3,4-diol (1)
(1S,4aS,10aR)-6-[(4bS,8S,8aR)-8-carboxy-2-hydroxy-4b,8-dimethyl-1-propan-2-yl-5,6,7,8a,9,10-hexahydrophenanthren-3-yl]-7-hydroxy-1,4a-dimethyl-8-propan-2-yl-2,3,4,9,10,10a-hexahydrophenanthrene-1-carboxylic acid (1)
NCGC00384622-01_C34H42O14_(1S,2S,4S,5R,6R,7S,9R,12R)-12-Acetoxy-6-(acetoxymethyl)-2-hydroxy-2,10,10-trimethyl-5-[(2-methylbutanoyl)oxy]-11-oxatricyclo[7.2.1.0~1,6~]dodecane-4,7-diyl di(3-furoate) (1)
(1'R,2R,3S,4'S,6S,8'R,10'E,12'S,13'S,14'E,16'E,20'R,21'R,24'S)-2-butan-2-yl-21',24'-dihydroxy-12'-[(2R,4S,5S,6S)-5-hydroxy-4-methoxy-6-methyloxan-2-yl]oxy-3,11',13',22'-tetramethylspiro[2,3-dihydropyran-6,6'-3,7,19-trioxatetracyclo[15.6.1.14,8.020,24]pentacosa-10,14,16,22-tetraene]-2'-one (1)
(4'Z,7'Z,10'Z,13'Z,16'Z,19'Z)-4Z,7Z,10Z,13Z,16Z,19Z-docosahexaenoic acid, diester with 1,2,3-propanetriol (1)
3-Oxolanosta-7,24Z-dien-26-oic acid (1)
[(2R,3R)-5,7-dihydroxy-2-[3,4,6-trihydroxy-5-oxo-8-[(2R,3S)-3,5,7-trihydroxy-3,4-dihydro-2H-chromen-2-yl]benzo[7]annulen-1-yl]-3,4-dihydro-2H-chromen-3-yl] 3,4,5-trihydroxybenzoate (1)
(Gal1-4GlcNAc)2-Sp (1)
Ala-Lys-Gly-Lys-Ser (1)
DTDP-4-keto-2-deoxy-beta-L-xylose (1)
Arg-Leu-Arg-Glu-Lys (1)
UDP-2-acetamido-2-deoxy-alpha-D-ribo-hex-3-uloseuronic acid (1)
Hydrogen trioxo[3-(1lambdachromen-1-ylium-2-yl)phenoxy]-lambdasulfanuide (1)
(9R,10S,12S,13S,14R,16S,18R)-13-ethyl-8-methyl-8,15-diazahexacyclo[14.2.1.01,9.02,7.010,15.012,17]nonadeca-2,4,6-triene-14,18-diol (1)
Ser-Thr-Pro-Asp-Ala (1)
Phe-Gln-Phe-Phe-Lys (1)
Eoxin A4 (1)
Asn-His-Ile-Arg (1)
NCGC00380724-01_C28H47NO8_(3R,5R,6S,7S,9R,11E,13S,14R)-14-Ethyl-13-hydroxy-3,5,7,9,13-pentamethyl-2,4,10-trioxooxacyclotetradec-11-en-6-yl 3,4,6-trideoxy-3-(dimethylamino)-D-xylo-hexopyranoside (1)

First Public Date

2024 (7)
2015 (3)
2026 (2)
2016 (2)
2025 (1)
2023 (1)
2019 (1)
2014 (1)

Study type

Transcription profiling by array (48)
RNA-seq of coding RNA (18)
ChIP-seq (10)
Comparative genomic hybridization by array (3)
Unknown experiment type (2)
Animal - High-throughput sequencing (2)
4C (2)
ATAC-seq (2)
RNA-seq of total RNA (2)
CUT&TAG (1)
Animal - Single-cell sequencing (1)
Other (1)
MicroRNA profiling by array (1)
DNA-seq (1)
RNA-seq of coding RNA from single cells (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2012 (19)
2010 (14)
2014 (13)
2015 (12)
2013 (8)
2011 (8)
2021 (6)
2016 (6)
2020 (5)
2026 (4)
2025 (4)
2018 (4)
2008 (4)
2024 (2)
2022 (2)
2023 (1)
2007 (1)
2005 (1)

Lab affiliation

Laboratory of Biochemistry, Faculty of Medicine, University of Thessaly, 41500 Biopolis, Larissa, Greece (1)
School of Pharmacy, China Pharmaceutical University. (1)

Tags

xref:PubMed:38355802 (7)
xref:PubMed:26694817 (3)
xref:PubMed:42333811 (1)
xref:PubMed:37468167 (1)
xref:PubMed:19901029 (1)
xref:EuropePMC:PMC12439926 (1)
xref:EuropePMC:PMC13041549 (1)

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SAFB1 mediates repression of immune regulators and apoptotic genes in breast cancer cells

The scaffold attachment factors SAFB1 and SAFB2 are paralogs, which are involved in cell cycle regulation, apoptosis, differentiation, and stress response. They have been shown to function as estrogen receptor co-repressors, and there is evidence for a role in breast tumorigenesis. To identify their...

ORGANISM(S): Homo sapiens

2010-02-21 | E-GEOD-15548 | biostudies-arrayexpress

Hypoxia-induced subnuclear re-distribution of SAFB1/2 alters their respective interactome

Oxygen deprivation (hypoxia) is encountered in physiological conditions but also characterizes many pathological conditions including ischemia and cancer. In order to survive, the cells usually rely upon the activation of the Hypoxia Inducible Factors (HIF), a small family of heterodimeric transcrip...

ORGANISM(S): Homo sapiens (Human)

2023-03-10 | PXD030933 | Pride