Salmonella typhimurium sl1344

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Transcriptomics (202)
Genomics (161)
Unknown (82)
Proteomics (41)
Other (9)
Metabolomics (2)

Organisms

Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 (145)
Salmonella enterica subsp. enterica serovar Typhimurium (55)
Andropogon gerardi (38)
Bacteria (38)
Canis lupus familiaris (38)
Cnidaria (38)
Cricetulus griseus (38)
Eukaryota (38)
Fasciola (38)
Hepatitis B virus (38)
Salmonella enterica (23)
Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (19)
Mus musculus (18)
Homo sapiens (18)
Salmonella enterica subsp. enterica serovar Enteritidis (11)
Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 (11)
Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91 (10)
Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S (4)
Salmonella enterica subsp. enterica serovar Enteritidis str. P125109 (3)
Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74 (3)
Sus scrofa (3)
Escherichia coli K-12 (2)
Escherichia coli (2)
Salmonella enterica subsp. enterica (2)
Bos taurus (1)
Bacteroides thetaiotaomicron VPI-5482 (1)
Escherichia coli str. K-12 substr. MG1655 (1)
Listeria monocytogenes EGD-e (1)
Pseudomonas aeruginosa PAO1 (1)
Salmonella enterica subsp. enterica serovar Typhi (1)

Organisms

Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 (74)
Salmonella enterica subsp. enterica serovar Typhimurium (23)
Mus musculus (10)
Salmonella enterica (4)
Homo sapiens (3)
Salmonella enterica subsp. enterica serovar Typhimurium str. W2342 (1)
Escherichia coli (1)

Repository

ENA (139)
geo (123)
biostudies-arrayexpress (109)
pride (38)
iProX (2)
MetaboLights (2)
EGA (1)
MassIVE (1)

Tissue

Cell culture (9)
Epithelial cell (4)
Macrophage (4)
Cecum (1)
Cell line cell (1)
Cell suspension culture (1)
HeLa cell (1)
Permanent cell line cell (1)

Disease

Salmonella gastroenteritis (2)
Salmonella infectious disease (2)
Acute diarrhea (1)
Malignant neoplasm of ovary (1)
Melanoma (1)
Salmonellosis (1)

Technology Type

Mass Spectrometry (38)
Shotgun proteomics (21)
Affinity purification coupled with mass spectrometry proteomics (7)
Bottom-up proteomics (7)
Gel-based experiment (6)
Data-dependent acquisition (3)
Mass spectrometry (2)
DiaPASEF (2)
All-ion fragmentation (1)
Data-independent acquisition (1)
HDMSE (1)

Instrument Platform

Illumina HiSeq 4000 (5)
Illumina MiSeq (2)
NextSeq 500 (2)
Axon- GenePix4000B (1)
Illumina NovaSeq 6000 (1)
Orbitrap Exploris 480 (1)
MS Imaging - (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)
LTQ-FT Finnigan (1)

Publication Date

2015 (33)
2013 (26)
2010 (23)
2011 (22)
2009 (19)
2020 (18)
2012 (18)
2017 (15)
2021 (14)
2014 (12)
2023 (11)
2016 (10)
2024 (9)
2018 (9)
2019 (7)
2025 (6)
2005 (6)
2022 (5)
2026 (4)
2004 (3)
2008 (2)
2007 (2)
2006 (1)

CHEBI ID

CHEBI:134291 (1)
CHEBI:156013 (1)
CHEBI:132674 (1)
CHEBI:136210 (1)
CHEBI:140865 (1)
CHEBI:136131 (1)
CHEBI:167033 (1)
CHEBI:136129 (1)
CHEBI:167031 (1)
CHEBI:71697 (1)
CHEBI:136203 (1)
CHEBI:140890 (1)
CHEBI:140893 (1)
CHEBI:140889 (1)
CHEBI:136132 (1)
CHEBI:132589 (1)
CHEBI:134459 (1)
CHEBI:64537 (1)
CHEBI:132673 (1)
CHEBI:165572 (1)
CHEBI:141494 (1)
CHEBI:86030 (1)
CHEBI:86039 (1)
CHEBI:86032 (1)
CHEBI:86480 (1)
CHEBI:86475 (1)
CHEBI:73061 (1)
CHEBI:85590 (1)
CHEBI:85573 (1)
CHEBI:85571 (1)

Metabolite Name

OH-C18:1 carnitine (1)
PE(P-16:0) (1)
C18 carnitine (1)
C18:1 carnitine (1)
C18:2 carnitine (1)
OH-C16:0 carnitine (1)
C16 carnitine (1)
C16:1 carnitine (1)
C14 carnitine (1)
PC(O-42:5) (1)
PC(P-42:4) (1)
PE(O-42-5) (1)
PE(38:0) (1)
PE(P-38:3) (1)
PE(P-38:5) (1)
PE(28:0)/Dimyristoylphosphatidylethanolamine (1)
PC(P-36:1) (1)
PC(P-34:1) (1)
PC(P-34:2) (1)
3-Amino-3-(4-Chlorophenyl)Propanoic Acid (1)
3-(7-Methoxy-1,3-Benzodioxol-5-Yl)Phenol (1)
Val-Leu-Ser (1)
N1-(2-Amino-1-{[(4,6-Dimethoxypyrimidin-2-Yl)Amino]Methyl}-2-Oxoethyl)Benzamide (1)
Lpc(O-3:0) (1)
2-Methoxy-5-(1H-1,2,4-Triazol-5-Yl)-4-(Trifluoromethyl)Pyridine (1)
Val-Ala-Leu (1)
Leu-Ile-Ser (1)
Ile-Ala-Ile (1)
3-Hydroxy-3-Methylglutaric Methyl Ester (1)
Arg-Glu-Ser (1)

First Public Date

2014 (43)
2021 (11)
2025 (10)
2017 (10)
2024 (9)
2023 (9)
2015 (9)
2022 (8)
2020 (8)
2013 (8)
2019 (6)
2016 (4)
2018 (3)
2026 (1)

Classification

bacteria (103)

Modification

Not available (1)

Study type

Transcription profiling by array (59)
RNA-seq of coding RNA (16)
Unknown experiment type (8)
ChIP-chip by tiling array (7)
ChIP-chip by array (4)
High-throughput sequencing (3)
Other (3)
Comparative genomic hybridization by array (2)
RNA-seq of total RNA (2)
RNA-seq of non coding RNA (2)
Transcription profiling by tiling array (1)
ChIP-seq (1)
DNA-seq (1)

Release Date

2010 (23)
2013 (19)
2012 (16)
2015 (15)
2011 (14)
2009 (13)
2014 (10)
2025 (9)
2022 (8)
2021 (7)
2020 (7)
2017 (7)
2023 (6)
2016 (6)
2024 (5)
2008 (5)
2005 (5)
2018 (4)
2019 (3)
2007 (2)
2004 (2)
2001 (2)
2000 (1)
1999 (1)
1998 (1)

Lab affiliation

Wellcome Trust Sanger Institute (3)
Department of Biological Sciences, Purdue University (2)
iRIP Unit, Department of Biochemistry and Microbiology, Ghent University, Gent, Belgium (2)
1 Biochemistry & Microbiology, University of Victoria, Victoria, BC, Canada 2 Genome BC Proteomics Centre, University of Victoria, Victoria, BC, Canada (1)
1Department of Biochemistry and Microbiology, Ghent University, Ghent, Belgium (1)
Andreas Otto, Institute for Microbiology, Ernst-Moritz-Arndt-University of Greifswald, F.-L. Jahnstrasse 15, 17489 Greifswald, Germany (1)
Biology (1)
Centre for Innate Immunity and Infectious Diseases, Hudson Institute of Medical Research, Clayton, Victoria, Australia (1)
Chief, Salmonella-Host Cells Interactions Section Deputy-Chief, Laboratory of Bacteriology National Institute of Allergy and Infectious Diseases (NIAID) National Institutes of Health Rocky Mountain Laboratories 6212 406-363 9292 (1)
College of Veterinary Medicine, Kansas State University, Manhattan, KS, 66506, USA. (1)
College of Veterinary Medicine, Kansas State University, Manhattan, KS, 66506, USA. (lab head) (1)
DEPARTMENT OF MICROBIAL BIOTECHNOLOGY LABORATORY OF INTRACELLULAR BACTERIAL PATHOGENS NATIONAL CENTER FOR BIOTECHNOLOGY CSIC SPAIN (1)
Daegu Catholic University School of Medicine (1)
Department of Biochemistry and Microbiology, Ghent University, Ghent, Belgium (1)
Department of Biochemistry, Ghent University, Belgium (1)
Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne 3000, Australia (1)
Department of Pharmacology, Physiology and Neuroscience, Rutgers, Newark, USA (1)
Department of Translational Medicine and Physiology, Washington State University, Spokane, WA, USA (1)
Faculty of Sciences, Department of Biochemistry and microbiology, Ghent University, Belgium (1)
Hangzhou Institute for Advanced Study, University of Chinese Academy of Science (1)
Humboldt-Universität zu Berlin, Institute for Biology – Bacterial Physiology, Berlin, Germany (1)
Institute of Microbiology, Department of Microbial Proteomics, University of Greifswald, D-17489, Greifswald, Germany (1)
Institute of Microbiology, Department of Microbial Proteomics, University of Greifswald, Greifswald, Germany (1)
Institute of Molecular Infection Biology, University of Würzburg, Würzburg Helmholtz Institute for RNA-based Infection Research, Würzburg (1)
Laboratory of Microbiology, Department of Biochemistry and Microbiology, Ghent University, Belgium (1)
Max-Delbrueck-Centre for Molecular Medicine (MDC), Berlin, Germany. (1)
National Center for Biotechnology (CNB-CSIC) Darwin,3, 28049 Madrid, Spain (1)
Newcastle University Biosciences Institute, UK (1)
RNA & Infection Laboratory Center for Neuroscience and Cell Biology (CNC) University of Coimbra (Portugal) (1)
Trinity College Dublin (1)

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Holistic Characterization of a Salmonella Typhimurium Infection Model Using Integrated Molecular Imaging

A more complete and holistic view on host–microbe interactions is needed to understand the physiological and cellular barriers that affect the efficacy of drug treatments and allow the discovery and development of new therapeutics. Here, we developed a multimodal imaging approach combining histop...

2022-04-07 | MTBLS2671 | MetaboLights

Mg2+ in drinking water exacerbates Salmonella Typhimurium T6SS-mediated intestinal bacterial competition through affecting metabolic reprogramming

By establishing a model of enteritis in mice infected with Salmonella Typhimurium, this study investigates the effects of ion concentration in drinking water on intestinal metabolites and microbiota structure in mice, as well as its influence on pathogen susceptibility and the host-patho...

2025-12-30 | MTBLS12690 | MetaboLights

The transcriptional programme of Salmonella Typhimurium reveals a key role for tryptophan metabolism in biofilms

Background: Biofilm formation by Salmonella species enhances the capacity of these pathogenic bacteria to survive stresses that are commonly encountered within food processing and during host infection. The persistence of Salmonella within the food chain has become a major health concern, as biofilm...

ORGANISM(S): Salmonella enterica

2010-05-18 | E-GEOD-17246 | biostudies-arrayexpress

Transcription profiling of Salmonella enterica serovar Typhimurium SL1344 and a SL1344 ramA gene knockout

The transcriptomes of Salmonella enterica serovar Typhimurium SL1344 and SL1344 lacking a functional ramA were compared

ORGANISM(S): Salmonella enterica

2009-12-31 | E-MEXP-2193 | biostudies-arrayexpress

Transcription profiling of Salmonella enterica serovar Typhimurium SL1344 and a ramA over-expressing strain

The transcriptomes of Salmonella enterica serovar Typhimurium SL1344 and an isogenic ramA gene knockout mutant which contained ramA upon an IPTG-inducible over-expression plasmid.

ORGANISM(S): Salmonella typhimurium

2009-12-31 | E-MEXP-2195 | biostudies-arrayexpress

Transcription profiling of Salmonella enterica serovar Typhimurium SL1344 and a ramR gene knockout

The transcriptomes of Salmonella enterica serovar Typhimurium SL1344 and an isogenic ramR::aph mutant were compared.

ORGANISM(S): Salmonella typhimurium

2009-12-31 | E-MEXP-2194 | biostudies-arrayexpress

Transcription profiling by array of Salmonella typhimurium SL1344 derived multidrug resistant mutant

Transcriptome of a ciprofloxacin selected multidrug resistant mutant derived from Salmonella Typhimurium SL1344

ORGANISM(S): Salmonella typhimurium

2010-12-04 | E-MEXP-2696 | biostudies-arrayexpress

Role of stpA in Salmonella typhimurium

This SuperSeries is composed of the following subset Series: GSE18424: The effect of stpA deletion on S. Typhimurium gene expression during growth in rich medium GSE18428: StpA prevents RpoS-dependent transcription during mid-exponential growth in S. Typhimurium GSE18450: Identification of StpA-bind...

ORGANISM(S): Salmonella typhimurium SL1344

2010-06-21 | E-GEOD-18452 | biostudies-arrayexpress

ChIP-seq analysis of MarA, SoxS, Rob and RamA biding across the Salmonella Typhimurium SL1344 genome

ChIP-seq data for Salmonella Typhimurium strain SL1344. The strain was grown at 37 degrees in LB medium and crosslinked with 1 % (v/v) formaldehyde. After sonication, to break open cells and fragment DNA, immunoprecipitations were done using anti-FLAG antibodies (for SoxS, Rob and RamA) or anti Myc ...

ORGANISM(S): Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344

2023-03-29 | E-MTAB-12627 | biostudies-arrayexpress

Transcriptomic profiling of Salmonella during lag, exponential and stationary phases of growth

Transcriptional profiles during all phases of growth of Salmonella Typhimurium SL1344 were obtained and used to investigate growth phase-dependent alterations in gene expression. Viable count growth curve analysis of the growth system showed a culture lag time of 2.09 hours, and profiles at 4, 20, 4...

ORGANISM(S): Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344

2011-12-13 | E-GEOD-22294 | biostudies-arrayexpress

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497 Results

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