Salmonids - OmicsDI

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Unknown (574)
Genomics (116)
Transcriptomics (78)
Proteomics (10)
Metabolomics (4)
Models (1)

Organisms

Oncorhynchus mykiss (36)
Salmo salar (35)
Osmerus mordax (9)
Coregonus clupeaformis (9)
Andropogon gerardi (9)
Bacteria (9)
Canis lupus familiaris (9)
Clostridium perfringens (9)
Cnidaria (9)
Cricetulus griseus (9)
Eukaryota (9)
Fasciola (9)
Hepatitis B virus (9)
Human betaherpesvirus 5 (9)
Japanese encephalitis virus group (9)
Madurella mycetomatis (9)
Mesocricetus auratus (9)
Miscanthus x giganteus (9)
Mycobacterium tuberculosis (9)
Oncorhynchus tshawytscha (7)
Solea senegalensis (3)
Salmo trutta (2)
Oncorhynchus nerka (2)
Lepeophtheirus salmonis (2)
Oncorhynchus kisutch (2)
Esox lucius (1)
Salvelinus fontinalis (1)
Fundulus heteroclitus (1)
Oncorhynchus clarkii (1)
Salvelinus alpinus (1)

Organisms

Oncorhynchus mykiss (16)
Salmo salar (11)
Lepeophtheirus salmonis (3)
Oncorhynchus kisutch (2)
Salmo trutta (2)
Flavobacterium psychrophilum 10 (1)
Flavobacterium branchiophilum FL-15 (1)
Flavobacterium psychrophilum FPG3 (1)
Flavobacterium psychrophilum FPG101 (1)
Piscine orthoreovirus (1)
Salmonidae (1)
Ceratonova shasta (1)
Chryseobacterium sp. BGARF1 (1)
Thymallus thymallus (1)
Flavobacterium covae (1)
Osmerus mordax (1)
Flavobacterium psychrophilum (1)
Salvelinus fontinalis (1)

Repository

ENA (114)
biostudies-arrayexpress (58)
geo (22)
pride (9)
MetaboLights (4)
BioModels (1)
PAXDB (1)

Tissue

Liver (2)
Blood plasma (1)
Epithelial cell (1)
Fibroblast (1)
Muscle (1)
Ovarian fluid (1)
Skin (1)

Technology Type

Mass Spectrometry (9)
Shotgun proteomics (5)
Mass spectrometry (3)
Bottom-up proteomics (3)
Gel-based experiment (2)
Mass spectrometry assay (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (3)
Illumina NovaSeq 6000 (2)
Illumina HiSeq 2500 (1)
Liquid Chromatography MS - positive (1)

Publication Date

2010 (20)
2013 (11)
2016 (7)
2012 (7)
2011 (7)
2023 (6)
2024 (5)
2018 (5)
2009 (4)
2007 (4)
2026 (3)
2014 (3)
2008 (3)
2015 (2)
2022 (2)
2021 (2)
2020 (2)
2005 (1)
2017 (1)

UNIPROT ID/AC

A0A060PIE3_ONCMY (1)
A0A060VLZ9_ONCMY (1)
A0A060VM28_ONCMY (1)
A0A060VM33_ONCMY (1)
A0A060VM37_ONCMY (1)
A0A060VM44_ONCMY (1)
A0A060VM58_ONCMY (1)
A0A060VM68_ONCMY (1)
A0A060VM74_ONCMY (1)
A0A060VM94_ONCMY (1)
A0A060VMC3_ONCMY (1)
A0A060VMD1_ONCMY (1)
A0A060VMD6_ONCMY (1)
A0A060VME0_ONCMY (1)
A0A060VMG6_ONCMY (1)
A0A060VMH9_ONCMY (1)
A0A060VMI7_ONCMY (1)
A0A060VMK2_ONCMY (1)
A0A060VMK5_ONCMY (1)
A0A060VML0_ONCMY (1)
A0A060VML4_ONCMY (1)
A0A060VMM0_ONCMY (1)
A0A060VMM4_ONCMY (1)
A0A060VMN5_ONCMY (1)
A0A060VMP3_ONCMY (1)
A0A060VMQ7_ONCMY (1)
A0A060VMQ9_ONCMY (1)
A0A060VMR5_ONCMY (1)
A0A060VMS4_ONCMY (1)
A0A060VMT6_ONCMY (1)

CHEBI ID

CHEBI:143745 (2)
CHEBI:195271 (2)
CHEBI:35038 (2)
CHEBI:34687 (2)
CHEBI:27997 (2)
CHEBI:73858 (2)
CHEBI:75342 (2)
CHEBI:16359 (2)
CHEBI:28865 (2)
CHEBI:64563 (2)
CHEBI:195269 (1)
CHEBI:75567 (1)
CHEBI:195270 (1)
CHEBI:195272 (1)
CHEBI:191103 (1)
CHEBI:34686 (1)
CHEBI:181126 (1)
CHEBI:195264 (1)
CHEBI:25640 (1)
CHEBI:190340 (1)
CHEBI:63555 (1)
CHEBI:195263 (1)
CHEBI:182784 (1)
CHEBI:165384 (1)
CHEBI:182695 (1)
CHEBI:166468 (1)
CHEBI:190338 (1)
CHEBI:143757 (1)
CHEBI:195265 (1)
CHEBI:34679 (1)

Metabolite Name

Dibutyl phthalate (DBP) (2)
Lyso-PC(16:0) (2)
1-({[2-(2-furylmethyl)-5-methylpyrrolidinyl]amino}methylene)-7-[8-({[2-(2-fury lmethyl)pyrrolidinyl]amino}methylene)-1,6-dihydroxy-3-methyl-5-(methylethyl)-7 -oxo(2-naphthyl)]-3,8-dihydroxy-6-methyl-4-(methylethyl)naphthalen-2-one (2)
Tris(2-butoxyethyl) phosphate (2)
Taurocholic acid (2)
1-Stearoyl-2-hydroxy-sn-glycero-3-phosphocholine (2)
Monoolein (2)
Elaidic acid (2)
Cholic acid (2)
Lyso PC (22:6) (1)
Methyl (3R,4R,5R)-5-[(2R,3R,4S,5S,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(E)-3-phenylprop-2-enoyl]oxyoxan-2-yl]oxy-3,4-dihydroxycyclohexene-1-carboxylate (1)
Propanoic acid, 3,3'-thiobis-, didodecyl ester (1)
2-((R)-4-((3R,5S,7S,8R,9S,10S,13R,14S,17R)-3,7-dihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanamido)ethane-1-sulfonic acid (1)
LU052302 Acetyl tributyl citrate|tributyl 2-acetyloxypropane-1,2,3-tricarboxylate (1)
1-Hexadecanoyl-sn-glycerol (1)
9-Octadecenamide, (Z)- (1)
Ethanol, 2-(2-butoxyethoxy)- (1)
Alpha-TOCHOPHERYL ACETATE (1)
NCGC00186665-03!2,3-dihydroxypropyl hexadecanoate (1)
[(1S,6S,7R,10R,15S,16R,18S,19R,20R)-6-(3-Furyl)-8,9,18,19,20-pentahydroxy-3-(1-hydroxy-2-methylpropylidene)-7,12,15,17-tetramethyl-4-oxo-5,11,13,21-tetraoxaheptacyclo[10.8.1.114,17.01,10.02,7.010,15.014,19]docos-16-yl]acetic acid (1)
Cyclohexasiloxane, dodecamethyl- (1)
Cyclopentasiloxane, decamethyl- (1)
NCGC00347651-02_C20H26O3_1-Phenanthrenecarboxylic acid, 1,2,3,4,4a,9,10,10a-octahydro-1,4a-dimethyl-7-(1-methylethyl)-9-oxo- (1)
Triphenyl phosphate (TPP)|Triphenyl phosphate|Triphenoxyphosphine oxide (1)
Glycohyodeoxycholic acid|SCHEMBL1654508|2-[4-(3,6-dihydroxy-10,13-dimethyl-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoylamino]acetic acid (1)
1-(9Z-Octadecenoyl)-sn-glycero-3-phosphocholine (1)
Cyclotetrasiloxane, octamethyl- (1)
2-((4R)-4-((3R,5S,7R,9S,10S,12S,13R,14S,17R)-3,7,12-trihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanamido)ethane-1-sulfonic acid (1)
Lauramidopropyl betaine|3-(Dodecanoylamino)propyl(carboxymethyl)dimethylammonium|carboxymethyl-[3-(dodecanoylamino)propyl]-dimethylazanium (1)
1,3,5-triprop-2-enyl-1,3,5-triazaperhydroine-2,4,6-trione (1)

IsPrivate

False (1)

Model Flag

Non Kinetic (1)

First Public Date

2014 (20)
2025 (12)
2024 (12)
2020 (11)
2021 (10)
2026 (9)
2022 (9)
2019 (8)
2017 (8)
2023 (4)
2013 (4)
2018 (3)
2015 (2)
2016 (1)
2012 (1)

Classification

viruses (1)

Study type

Transcription profiling by array (54)
RNA-seq of coding RNA (3)
Unknown experiment type (1)

Release Date

2021 (62)
2022 (55)
2019 (50)
2020 (47)
2018 (45)
2023 (45)
2016 (39)
2025 (37)
2017 (34)
2024 (30)
2010 (29)
2014 (28)
2013 (28)
2015 (26)
2012 (18)
2008 (17)
2011 (15)
2009 (7)
2026 (4)
2007 (4)
2005 (4)
2003 (3)
2006 (2)
2004 (1)
2001 (1)
1998 (1)

Lab affiliation

Department of Biology (1)
Department of Biopharmaceutical and Medical Science, Galway-Mayo Institute of Technology (1)
Division of Fish Health Department of Farm Animals and Veterinary Public Health University of Veterinary Medicine Vienna Veterinaerplatz 1 1210 Vienna Austria (1)
Faculty of Chemistry, Biotechnology and Food Science Norwegian University of Life Sciences, 1432, Ås Norway (1)
Institute of Aquaculture, University of Stirling (1)
Proteomics facility, Central Science Laboratory, University of Tasmania (1)
School of Biological Sciences, University of Aberdeen, United Kingdom (1)
UR1037 – Laboratoire de Physiologie et Génomique des Poissons (LPGP), INRAE, France (1)
Universidad Andrés Bello, Laboratorio de Patología de Organismos Acuáticos y Biotecnología Acuícola, Facultad de Ciencias de la Vida, Viña del Mar, Chile (1)

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Fate of MHCII in salmonids following 4WGD.

Not available

S-EPMC7862078 | biostudies-literature

A brain microbiome in salmonids

PRJNA1033688 | ENA

MHC class I evolution; from Northern pike to salmonids.

Not available

S-EPMC7853315 | biostudies-literature

Evolution of the IRF Family in Salmonids.

Not available

S-EPMC7915476 | biostudies-literature

A brain microbiome in salmonids at homeostasis.

Not available

S-EPMC11409976 | biostudies-literature

Fish coelomic fluid proteomic analysis by LC-MSMS

The aim of this study was to complete and fully characterize the proteome of rainbow trout coelomic fluid (CF). Furthermore, we intended to identify the proteins responsible for the extension of egg viability in salmonids coelomic fluid. For this, the proteomic composition of different salmonids CF ...

ORGANISM(S): Acipenser gueldenstaedtii Sander lucioperca Oncorhynchus mykiss (Rainbow trout) (Salmo gairdneri) Salmo salar (Atlantic salmon) Salmo trutta Cyprinus carpio (Common carp) Acipenser baerii Carassius auratus

2024-05-21 | PXD034989 | Pride