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TranscriptomicsRNA-seq of three Spodoptera frugiperda tissues (Midgut, Fat body, Hemocytes), at 2 time-points (8h and 15h) after infestation by entomopathogenic nematodes Steinernema carpocapsae/Xenorhabdus nematophila
Nematodes such as Steinernema carpocapsae are used as organic pesticides because of their ability to prey on live insects. They do so thanks to their symbiotic bacteria, that they release within the hemocoel of insects. In this study we wanted to study how Spodoptera frugiperda, a Lepidoptera pest o...
ORGANISM(S): Spodoptera frugiperda 
2019-12-03 | E-MTAB-7976 | biostudies-arrayexpress
TranscriptomicsRNA-seq of coding RNA of Staphylococcus aureus wild type strain before and after 30 min of exposure to 13 mM itaconic acid stress reveals adaption to the immunometabolite itaconate by inducing acid and oxidative stress responses
S. aureus COL was cultivated in RPMI medium in 3 biological replicates and harvested at an OD500 of 0.5 before (as control) and at 30 min after exposure to 13 mM itaconic acid stress. Cells were disrupted in 3 mM EDTA/ 200 mM NaCl lysis buffer with a Precellys24 ribolyzer followed by RNA isolation u...
ORGANISM(S): Staphylococcus aureus 
2023-09-10 | E-MTAB-13287 | biostudies-arrayexpress
TranscriptomicsComparison of nucleotide-resolution, genome-wide transcriptome maps of Escherichia coli K12 strain BW25113 and Streptomyces coelicolor A3(2) strain M145.
This data contained within this entry was produced as part of a study that included differential RNA-sequencing. S. coelicolor and E. coli reference strains were grown in batch culture with shaking. The E. coli sample was extracted during mid-exponential growth, while the S. coelicolor sample was ex...
ORGANISM(S): Escherichia coli K-12 
2013-04-20 | E-GEOD-46232 | biostudies-arrayexpress
TranscriptomicsMicroRNA-offset RNA regulates gene expression and cell proliferation (Small RNA-Seq)
MicroRNA-offset RNAs (moRs) were first identified in simple chordates and subsequently in mouse and human cells by deep sequencing of short RNAs. MoRs are derived from sequences located immediately adjacent to microRNAs (miRs) in the primary miR (pri-miR). Currently moRs are considered to be simply ...
ORGANISM(S): Mus musculus 
2016-06-01 | E-GEOD-75113 | biostudies-arrayexpress
TranscriptomicsSeasonal RNAseq of Antarctic krill, Euphausia superba, from three different latitudinal regions of the Southern Ocean
The experiment aimed to investigate seasonal and regional differences in gene expression in Antarctic krill in three different latitudinal regions of the Southern Ocean with variable photoperiodic conditions: South Georgia (54°S), South Orkneys/Bransfield Strait (60°S-63°S) and Lazarev Sea (62°S -66...
ORGANISM(S): Euphausia superba 
2020-08-12 | E-MTAB-7467 | biostudies-arrayexpress
TranscriptomicsGlobal profiling of B. subtilis comparing wild-type to mutants with altered cytoplasmic membrane composition
The Bacillus subtilis membrane contains diacylglycerol-based lipids with at least five distinct headgroups that impart distinct physical and chemical properties to the lipid bilayer. Here, we describe the phenotypic characterization of mutant strains lacking one or more of the following lipids: glyc...
ORGANISM(S): Bacillus subtilis 
2010-05-18 | E-GEOD-13036 | biostudies-arrayexpress
TranscriptomicsIdentification of sex-biased genes in Drosophila using gonad RNAseq data
Purpose: Accurate identification of sex-biased genes requires precise measurement of gene expression levels in gonads. This study is designed to provide such data for various Drosophila species to enhance studies of sex-biased gene expression and evolution across the genus. Methods: Virgin flies wer...
ORGANISM(S): Drosophila yakuba 
2013-11-04 | E-GEOD-52058 | biostudies-arrayexpress
UnknownIdentification of intratumor bacteria-associated prognostic risk score in adrenocortical carcinoma.
Not available
S-EPMC10986527 | biostudies-literature
TranscriptomicsChIP-seq for Leu3 with addition of different levels of leucine, valine and isoleucine
In this experiment we wanted to see how the binding behavior of the S. Cerevisiae transcription factor Leu3, on of the main regulators of leucine biosynthesis, is affected by different availability of the branched chain amino acids. For this we grow the cells in shake flask under glucose limitation ...
ORGANISM(S): Saccharomyces cerevisiae 
2020-07-01 | E-MTAB-8820 | biostudies-arrayexpress
TranscriptomicsRNA-seq of coding RNA of Staphylococcus aureus COL wild type strain before and after 30 min of exposure to 176 μM neutrophil-derived oxidant hypothiocyanous acid (HOSCN) during exponential phase of an OD540 of 0.5 in LB medium
Staphylococcus aureus COL wild type strain was cultivated in LB medium in 3 biological replicates and harvested at an OD500 of 0.5 before (as control) and at 30 min after exposure to 1176 μM neutrophil-derived oxidant hypothiocyanous acid (HOSCN) stress. Cells were disrupted in 3 mM EDTA/ 200 mM NaC...
ORGANISM(S): Staphylococcus aureus 
2023-09-30 | E-MTAB-13314 | biostudies-arrayexpress
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