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ProteomicsSpectral Cruncher: A Visualization Tool Integrating Manual Curation, Ion-Intensity Prediction, and De Novo Tag Generation
Here's a suggested Project Description for your PRIDE submission: Project Description This dataset contains mass spectrometry raw files used as training data for SpecFormer, a transformer-based ion intensity prediction model integrated within PatternLab for Proteomics (Spectral Cruncher module). Th...
ORGANISM(S): Mus musculus (Mouse) Homo sapiens (Human) 
2026-02-16 | PXD069898 | Pride
Ion intensity prediction Multi-species omics Single-cell proteomics 
TranscriptomicsTranscription profiling by array of primary prostate cancer biopsies wutg different ETS transcription factor rearrangements
This work was conducted to identify shared and specific target genes of different ETS transcription factor rearrangements in prostate cancer. Potential target genes were identified by differential gene expression analysis of primary tumor samples with ETS rearrangements, and validated by ETS silenci...
ORGANISM(S): Homo sapiens 
2014-08-12 | E-GEOD-42954 | biostudies-arrayexpress
UnknownA retrospective pathology study of two Neotropical deer species (1995-2015), Brazil: Marsh deer (Blastocerus dichotomus) and brown brocket deer (Mazama gouazoubira).
Not available
S-EPMC5991706 | biostudies-literature
UnknownmiRNAs may play a major role in the control of gene expression in key pathobiological processes in Chagas disease cardiomyopathy.
Not available
S-EPMC7787679 | biostudies-literature
MetabolomicsUntargeted metabolomics sheds light on the secondary metabolism of fungi triggered by choline-based ionic liquids
Fungal secondary metabolites constitute a rich source of yet undiscovered bioactive compounds. Their production is often silent under standard laboratory conditions, but the production of some compounds can be triggered simply by altering the cultivation conditions. The usage of an organic salt - io...
2022-07-15 | MTBLS5072 | MetaboLights
UnknownImpairment of Multiple Mitochondrial Energy Metabolism Pathways in the Heart of Chagas Disease Cardiomyopathy Patients.
Not available
S-EPMC8633876 | biostudies-literature
UnknownFacial Emotion Recognition in Psychosis and Associations With Polygenic Risk for Schizophrenia: Findings From the Multi-Center EU-GEI Case-Control Study.
Not available
S-EPMC9434422 | biostudies-literature
UnknownWhole-Genome Cardiac DNA Methylation Fingerprint and Gene Expression Analysis Provide New Insights in the Pathogenesis of Chronic Chagas Disease Cardiomyopathy.
Not available
S-EPMC5849099 | biostudies-literature
UnknownGermline mutations in BRCA1, BRCA2, CHEK2 and TP53 in patients at high-risk for HBOC: characterizing a Northeast Brazilian Population.
Not available
S-EPMC4785545 | biostudies-literature
UnknownEffect of Lung Recruitment and Titrated Positive End-Expiratory Pressure (PEEP) vs Low PEEP on Mortality in Patients With Acute Respiratory Distress Syndrome: A Randomized Clinical Trial.
Not available
S-EPMC5710484 | biostudies-literature
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