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MetabolomicsMulti-omics analysis of xylem sap uncovers dynamic modulation of poplar defenses by ammonium and nitrate
Xylem sap is the major transport route for nutrients from roots to shoots. In the present study, we investigated how variations in nitrogen (N) nutrition affected the metabolome and proteome of xylem sap and the growth of the xylem endophyte Brennaria salicis, and we also report transcriptional re-w...
2022-07-04 | MTBLS2305 | MetaboLights
MetabolomicsMaple Sap analysis from Ontario Canada
Not available
ORGANISM(S): Acer saccharum 
ST001435 | MetabolomicsWorkbench
TranscriptomicsA new strategy to identify the long-distance mobile peptides from xylem sap.
Total RNAs were extracted from internodes and roots of 18 day-after-germination soybean plants, and the expression levels of the genes that encode xylem sap associated peptides or proteins were analyzed.
ORGANISM(S): Glycine max 
2015-10-23 | E-MTAB-5052 | biostudies-arrayexpress
TranscriptomicsTranscriptomics of Xanthomonas campestris pv campestris in cabbage xylem sap
Xylem sap of young cabbage plantlets was recovered from root pressure exudation and used as a growth medium for the vascular pathogen Xanthomonas campestris pv campestris, the causative agent of the black rot of Brassicaceae.
ORGANISM(S): Xanthomonas campestris pv campestris 
2014-01-04 | E-MTAB-2290 | biostudies-arrayexpress
ProteomicsAnalyses of the Xylem Sap Proteomes Identified Candidate Fusarium virguliforme Proteinacious Toxins
Sudden death syndrome (SDS) is caused by the ascomycete fungus, Fusarium virguliforme. The pathogen secretes one or more toxins into the infected soybean roots to cause foliar SDS. This study investigated if the xylem sap of F. virguliforme-infected soybean plants contains secreted F. virguliforme-...
ORGANISM(S): Glycine max Fusarium virguliforme 
2014-05-23 | PXD000873 | Pride
Fusarium Toxins Soybean Xylem sap 
ProteomicsChanges in the Proteome of Xylem Sap in Brassica oleracea in Response to Fusarium oxysporum Stress
Fusarium oxysporum f. sp. conlutinans (Foc) is a serious root-invading and xylem-colonizing fungus that causes yellowing in Brassica oleracea. To comprehensively understand the interaction between F. oxysporum and B. oleracea, composition of the xylem sap proteome of the non-infected and Foc-infecte...
ORGANISM(S): Brassica oleracea var. capitata (Cabbage) 
2016-01-26 | PXD003378 | Pride
F. oxysporum f. sp. conglutinans Brassica oleracea Xylem sap Proteomics 
ProteomicsVascular sap proteome profiling of Eucalyptus grandis, Eucalyptus urophylla and Eucalyptus camaldulensis
We present a label free proteome dataset of the vascular sap proteome of three commercially important Eucalyptus species (Eucalyptus camaldulensis, Eucalyptus grandis and Eucalyptus urophylla). Protein extraction from the vascular system was carried out using a pressure bomb, in solution digested an...
ORGANISM(S): Eucalyptus urophylla Eucalyptus grandis Eucalyptus camaldulensis 
2025-05-30 | PXD037915 | Pride
Plant proteomics Innate immunity Long-distance signaling 
ProteomicsStructural Insights into Complement Inhibition: Visualizing Distinct Binding Modes of C4b-binding Protein Complexes with C4b and SAP
C4b-binding protein (C4BP) is an innate immune inhibitor found in serum. Human C4BP adopts spider-like higher-order structures (HOS) formed by disulfide-linked C4BPα and C4BPβ chains that non-covalently bind vitamin K-dependent protein S (ProS). These spider-like structures can form even larger comp...
ORGANISM(S): Homo sapiens (Human) 
2025-08-07 | PXD059888 | Pride
Mass photometry Complement regulation High-speed atomic force microscopy Serum amyloid p component. C4b-binding protein C4b Cross-linking mass spectrometry 
ProteomicsDeep learning neural network prediction method improves proteome profiling of vascular sap of grapevines during Pierces disease development
Plant secretome studies have shown the importance of plant defense proteins in the vascular system against pathogens. Studies on Pierces disease of grapevines caused by the xylem-limited bacteria Xylella fastidiosa Xf have detected proteins and pathways associated to its pathobiology. Despite the bi...
ORGANISM(S): Vitis Vinifera (ncbitaxon:29760) Xylella Fastidiosa Temecula1 (ncbitaxon:183190) 
2020-08-12 | MSV000085942 | MassIVE
TranscriptomicsExpression data from serum-stimulated NIH 3T3 cells stably expressing control (pLKO.1) vector or shRNAs targeting Net or Sap-1
Although much is known about focal adhesion signaling induced by cell adhesion, how adhesion directs changes in transcription to control cell behavior is far less understood. Here we describe a novel mechanism by which changes in adhesion switch the activities of the mitogen-activated protein kinas...
ORGANISM(S): Mus musculus 
2013-01-01 | E-GEOD-26640 | biostudies-arrayexpress
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