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ProteomicsDeep proteome analysis by DIA-MS
To expand proteome coverage, the MS range in DIA-MS was examined. In addition, we analyzed host proteins in the feces of control and repeated social defeat stress (R-SDS) model mice by DIA-MS with an optimal MS range.
ORGANISM(S): Homo Sapiens (human) Mus Musculus (mouse) 
2022-04-28 | PXD032698 | JPOST Repository
TranscriptomicsIdentification of genes differentially expressed in lung cancer cells after the transfection of miR-221 or miR-222.
To evaluate involvement of miR-221 and miR-222 in lung cancer, we investigated the effects of miR-221 and miR-222 overexpression on six lung cancer cell lines as well as one immortalized normal human bronchial epithelial cell line. Two cell lines, H3255 and H1299 with no replicates were studied. Ce...
ORGANISM(S): Homo sapiens 
2015-05-22 | E-GEOD-57676 | biostudies-arrayexpress
ProteomicsDeep proteome analysis by DIA-MS with FAIMS
We aimed to expand the proteome coverage by single-shot measurements using optimizing high-field asymmetric waveform ion mobility spectrometry (FAIMS) parameters in DIA-MS. In addition, we analyzed host proteins in the feces of control and repeated social defeat stress (R-SDS) model mice with optima...
ORGANISM(S): Homo Sapiens (human) Mus Musculus (mouse) 
2022-04-28 | PXD029853 | JPOST Repository
TranscriptomicsGene expression profiles in mouse embryonic fibroblasts (MEFs) derived from BCL11B-KO mice
The differentiation of preadipocytes into adipocytes is controlled by several transcription factors, including peroxisome proliferator-activated receptor γ (PPARγ) and CCAAT/enhancer-binding protein α (C/EBPα), which are known as master regulators of adipogenesis. BCL11B is a zinc finger-type tr...
ORGANISM(S): Mus musculus 
2016-09-05 | E-GEOD-83980 | biostudies-arrayexpress
UnknownMolecular Evolutionary Analyses of Shiga toxin type 2 subunit A Gene in the Enterohemorrhagic Escherichia coli (EHEC).
Not available
S-EPMC11434168 | biostudies-literature
UnknownMolecular Evolutionary Analyses of the Spike Protein Gene and Spike Protein in the SARS-CoV-2 Omicron Subvariants.
Not available
S-EPMC10537508 | biostudies-literature
TranscriptomicsIdentification of Myt1 as a subunit of the neural cell type-specific LSD1 complex
Regulation of spatiotemporal gene expression in higher eukaryotic cells is critical for the precise and orderly development of undifferentiated progenitors into committed cell types of the adult. Recently, dynamic epigenomic regulation, including chromatin remodeling and histone modifications by tra...
ORGANISM(S): Mus musculus 
2014-05-20 | E-GEOD-49685 | biostudies-arrayexpress
UnknownASK1 restores the antiviral activity of APOBEC3G by disrupting HIV-1 Vif-mediated counteraction.
Not available
S-EPMC4423214 | biostudies-literature
ProteomicsEvaluation of suitability of dried saliva spots for in-depth proteome analyses of clinical applications
We performed a single-shot DIA-MS proteome analysis of dried saliva spots (DSS) to investigate whether it provides a platform to complement the dried blood spot (DBS) data.
ORGANISM(S): Homo Sapiens (human) 
2022-04-26 | PXD031181 | JPOST Repository
ProteomicsEvaluation of suitability of dried saliva spots for in-depth proteome analyses of clinical applications - Additional file
We performed a single-shot DIA-MS proteome analysis of dried saliva spots (DSS) to investigate whether it provides a platform to complement the dried blood spot (DBS) data.
ORGANISM(S): Homo Sapiens (human) 
2022-04-26 | PXD032116 | JPOST Repository
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