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TranscriptomicsLeucegene: ALL sequencing
RNA sequencing of human leukemia The goals of this project are to obtain a comprehensive study of mutations and gene expression in human T ALL (acute lymphoblastic leukemia). Methods: T ALL cells were thawed. DNA and RNA (polyA) was extracted and sequences were obtained with an Illumina HiSeq 2000 s...
ORGANISM(S): Homo sapiens 
2013-11-06 | E-GEOD-49601 | biostudies-arrayexpress
TranscriptomicsLeucegene: AML sequencing
RNA sequencing of human leukemia The goals of this project are to obtain a comprehensive study of mutations and gene expression in human acute myeloid leukemia (AML). Methods: AML cells were thawed. DNA and RNA (polyA) was extracted and sequences were obtained with an Illumina HiSeq 2000 sequencer.
ORGANISM(S): Homo sapiens 
2013-11-06 | E-GEOD-49642 | biostudies-arrayexpress
TranscriptomicsDifferential analysis of HOXA1 in adult cells at isoform resolution by RNA-Seq [Agilent]
High-throughput RNA sequencing (RNA-Seq) has enabled accurate gene discovery and expression estimation, but robust differential analysis of gene and transcript abundances has proven difficult. We present a new algorithm, implemented in the freely available tool Cuffdiff, which integrates transcript-...
ORGANISM(S): Homo sapiens 
2012-12-11 | E-GEOD-37690 | biostudies-arrayexpress
UnknownSpatiotemporal expression and transcriptional perturbations by long noncoding RNAs in the mouse brain.
Not available
S-EPMC4460505 | biostudies-literature
TranscriptomicsLeucegene: AML sequencing (part 2)
RNA sequencing of human leukemia The goals of this project are to obtain a comprehensive study of mutations and gene expression in human acute myeloid leukemia (AML). Methods: AML cells were thawed. DNA and RNA (polyA) was extracted and sequences were obtained with an illumina HiSeq 2000 sequencer. ...
ORGANISM(S): Homo sapiens 
2014-02-05 | E-GEOD-52656 | biostudies-arrayexpress
TranscriptomicsLeucegene: AML sequencing (part 3)
RNA sequencing of human leukemia The goals of this project are to obtain a comprehensive study of mutations and gene expression in human acute myeloid leukemia (AML). Methods: AML cells were thawed. DNA and RNA (polyA) was extracted and sequences were obtained with an illumina HiSeq 2000 sequencer. ...
ORGANISM(S): Homo sapiens 
2015-07-09 | E-GEOD-62190 | biostudies-arrayexpress
TranscriptomicsRNA-Seq characterization of human H1-derived NPC differentiation timecourse
High resolution transcriptional profiling of H1-derived human neuronal precursor cells over a timecourse of differentiation in vitro. Human NPC differentiation timecourse covers Days 0,1,2,4,5,11, and 18 after induction of neuronal differentiation as described in manuscript. Each time point was assa...
ORGANISM(S): Homo sapiens 
2014-04-15 | E-GEOD-56785 | biostudies-arrayexpress
TranscriptomicsTrans-chromosomal regulation by a novel lincRNA required for adipogenesis that escapes X-chromosome inactivation
Long noncoding RNAs (lncRNAs) have emerged as an important layer of genome regulation with common mechanistic themes including the formation of ribonucleoprotein complexes. Here, we present a novel X-linked lncRNA termed linc-Firre that escapes X-chromosome inactivation and forms trans-chromosomal i...
ORGANISM(S): Homo sapiens 
2013-06-01 | E-GEOD-45157 | biostudies-arrayexpress
TranscriptomicsRNA-Seq characterization of select lincRNA knockout mouse models
It has become clear that long intergenic noncoding RNAs (lincRNAs) are an important layer of genome regulation. Thousands have been identified in mammals, yet only a few have been tested through genetic ablation in animal models. Of the few that have, many yields weak to unobservable phenotypes, rai...
ORGANISM(S): Mus musculus 
2013-11-30 | E-GEOD-49581 | biostudies-arrayexpress
UnknownMediation of Age and Thrombectomy Outcome by Neuroimaging Markers of Frailty in Patients With Stroke.
Not available
S-EPMC10762575 | biostudies-literature
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