Scar - OmicsDI

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Unknown (4166)
Genomics (723)
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Proteomics (72)
Other (22)
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Clinical (7)
Methylation profiling (7)
Genomic (4)
Models (1)
Multiomics (1)

Organisms

Homo sapiens (328)
Mus musculus (304)
Rattus norvegicus (42)
Danio rerio (30)
Arabidopsis thaliana (18)
Schizosaccharomyces pombe (11)
Bos taurus (10)
Saccharomyces cerevisiae (10)
Oryctolagus cuniculus (10)
Sus scrofa (10)
Drosophila melanogaster (7)
Daphnia magna (4)
Ambystoma mexicanum (4)
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Notophthalmus viridescens (3)
Saccharomyces pastorianus (2)
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Caenorhabditis elegans (2)
Aplysina aerophoba (1)
Lathyrus sativus (1)
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Parasteatoda tepidariorum (1)
Coxiella burnetii (1)
Mycobacterium avium subsp. paratuberculosis (1)
Bubalus bubalis (1)
Nothobranchius furzeri (1)
Trypanosoma brucei brucei (1)
Malus domestica (1)

Organisms

Mus musculus (183)
Homo sapiens (156)
soil metagenome (63)
sediment metagenome (50)
Danio rerio (17)
Rattus norvegicus (12)
Sus scrofa (8)
Rangifer tarandus (6)
Oryctolagus cuniculus (6)
Ambystoma mexicanum (3)
Notophthalmus viridescens (2)
Pleurodeles waltl (2)
Acomys cahirinus (1)
Exaiptasia diaphana (1)
Anolis carolinensis (1)
Magallana bilineata (1)
Aureobasidium pullulans (1)
human tracheal metagenome (1)
Cavia porcellus (1)
Bipolaris sorokiniana (1)
Secale cereale (1)
Xenopus laevis (1)
Prunus dulcis (1)
Cucumis melo (1)
Mammalia (1)
Phoenix dactylifera (1)
Ipomoea batatas (1)
Canis lupus familiaris (1)
Sus scrofa domesticus (1)

Repository

ENA (637)
biostudies-arrayexpress (394)
geo (386)
pride (39)
EGA (37)
MassIVE (21)
iProX (8)
MetaboLights (8)
jPOST (5)
dbGaP (4)
ExpressionAtlas (2)
BioModels (1)
PanoramaPublic (1)

Tissue

Skin (10)
Heart (5)
Brain (4)
Blood plasma (3)
Fibroblast (3)
Cell culture (3)
Melanocyte (2)
Ear (1)
Glioblastoma cell (1)
Vocal fold (1)
Urethra (1)
Oral mucosa (1)
JURKAT cell (1)
Blood serum (1)
Cell suspension culture (1)
Embryo (1)
Tendon (1)
Lung (1)
Permanent cell line cell (1)
Blood cell (1)
Colon (1)
T cell (1)

Disease

Wounds and Injuries (3)
Normal (2)
Colorectal Neoplasms (2)
Skin melanoma (2)
Inoculated with P. syringae pv. tomato strain DC3000 + avrRps4 (1)
Injured (1)
Not infected (1)
Temporal lobe epilepsy (1)
These mice have a relatively normal first wave of spermatogenesis but never become fertile. Older animals show increased apoptosis of germ cells, increasing in severity as germ cell stage advances. (1)
Infected by E. lata strain NE85-1 (1)
Adenocarcinoma (1)
Breast cancer (1)
Neoplasm Recurrence, Local (1)
Colonic Neoplasms (1)
Colorectal cancer (1)
Colorectal cancer (1)
Neoplasms (1)
Hypertrophic cardiomyopathy (1)
Idiopathic pulmonary fibrosis (1)
Myocardial infarction (1)
Cardiovascular system disease (1)
Heart failure (1)
Glioblastoma (1)
Ulcerative colitis (1)
Disease free (1)

Technology Type

Mass Spectrometry (39)
Shotgun proteomics (21)
Bottom-up proteomics (9)
Mass spectrometry (7)
Affinity purification coupled with mass spectrometry proteomics (6)
Data-dependent acquisition (4)
SWATH MS (3)
Data-independent acquisition (2)
Illumina Omni 2.5, Illiumina Omni 2.5 (1)
Illumina HiSeq 2000 (1)
Mass spectrometry assay (1)
SRM/MRM (1)
Gel-based experiment (1)

Instrument Platform

Illumina NovaSeq 6000 (19)
Illumina HiSeq 4000 (11)
NextSeq 500 (11)
Illumina HiSeq 2500 (8)
NextSeq 2000 (5)
Q Exactive (5)
Illumina HiSeq 2000 (4)
LTQ Orbitrap Elite (3)
Illumina Genome Analyzer II (2)
Scanning hardware (2)
Illumina MiSeq (2)
10X Genomics Chromium Controller Instrument, Thermocycler (PCR machine), Bioanalyzer 2200 (Agilent), Qubit Fluorometer (Thermo Fisher Scientific) (1)
Biological safety cabinet, Water bath (37°C), Centrifuge, 70 µm and 35 µm cell strainers, Countstar Fluorescence Cell Analyzer (1)
Surgical scalpel (1)
Chromium 10X Controller (1)
10x Chromium Controller (1)
Agilent Microarray Scanner G2505c (1)
G2565AA DNA microarray scanner [Agilent] (1)
G2505A DNA microarray scanner [Agilent] (1)
418 [Affymetrix] (1)
ScanArray 4000XL [PerkinElmer] (1)
Illumina NovaSeq X (1)
Nanodrop spectrophotometer (1)
No (1)
10X Chromium (1)
In-house built IMS-MS with Agilent 6538 QTOF MS (1)
SLIM TWIMS-MS coupled with Agilent 6224 TOF (1)
RapidFire 365 coupled with Agilent 6560 Ion Mobility QTOF (1)
MOBIE (1)
QE-HF in DIA mode in the LC-MS/MS (1)

Publication Date

2025 (101)
2024 (78)
2026 (65)
2014 (62)
2013 (52)
2023 (47)
2022 (46)
2021 (45)
2015 (43)
2011 (41)
2010 (41)
2012 (34)
2020 (33)
2016 (32)
2019 (31)
2018 (24)
2008 (22)
2017 (15)
2007 (13)
2009 (10)
2006 (10)
2005 (5)
2002 (5)
2004 (3)
2003 (1)

CHEBI ID

CHEBI:17750 (4)
CHEBI:16411 (3)
CHEBI:24813 (3)
CHEBI:27897 (3)
CHEBI:18344 (3)
CHEBI:172795 (2)
CHEBI:173142 (2)
CHEBI:168330 (2)
CHEBI:176333 (2)
CHEBI:134473 (2)
CHEBI:168903 (2)
CHEBI:172667 (2)
CHEBI:172666 (2)
CHEBI:172662 (2)
CHEBI:169249 (2)
CHEBI:170119 (2)
CHEBI:169139 (2)
CHEBI:176016 (2)
CHEBI:172639 (2)
CHEBI:172617 (2)
CHEBI:74541 (2)
CHEBI:172571 (2)
CHEBI:172569 (2)
CHEBI:172567 (2)
CHEBI:172561 (2)
CHEBI:172128 (2)
CHEBI:168879 (2)
CHEBI:176447 (2)
CHEBI:172111 (2)
CHEBI:174975 (2)

Metabolite Name

L-Cystine (3)
Allixin (3)
Indoleacetaldehyde (3)
Citrulline (3)
Indole (3)
Taurine (3)
Uridine (3)
Tryptophan (3)
Caribenolide I (2)
Epithienamycin B (2)
Ganoderic Acid Mk (2)
Leucomycin A6 (2)
3-Phenylpropyl Glucosinolate (2)
Chivosazole F (2)
Istamycin B (2)
Ro 18-5364 (2)
Gnidicin (2)
Propaphos (2)
Malyngamide H (2)
Tiamulin (2)
Prometon (2)
4-Hydroxybenzoic Acid (2)
Momordicinin (2)
Candoxatrilat (2)
3-Oxotetradecanoyl-CoA (2)
Beta-Citraurinene (2)
[2,6-dihydroxy-3-(3,5,6,7-tetrahydroxy-4-oxo-4H-chromen-2-yl)phenyl]oxidanesulfonic acid (2)
Eleutheroside B1 (2)
Leu-Leu-Leu (2)
(-)-Quebrachamine (2)

First Public Date

2026 (120)
2025 (101)
2024 (95)
2020 (79)
2023 (58)
2022 (50)
2021 (38)
2019 (31)
2014 (29)
2018 (14)
2017 (13)
2016 (4)
2015 (4)
2013 (1)

Modelling Approach

Ordinary differential equation model (1)

Study status

Completed (5)
No longer available (1)
Terminated (1)

Lab affiliation

Assistant Professor of Microbiology, Immunology, and Cancer Biology Associate Director for Diversity, Equity, and Inclusio at the Carter Immunology Center University of Virginia Charlottesville, VA (1)
LP-CSIC/UAB (1)
The First Affiliated Hospital of China Medical University (1)
Department of Wound Infection and Drug, State Key Laboratory of Trauma, Burn and Combined Injury, Daping Hospital, Army Medical University (Third Military Medical University), Chongqing 400042, P. R. China (1)
Translational Analytics, ISAS, Dortmund, Germany (1)
Research Unit "Functional Proteomics and Metabolic Pathways", Institute of Pathology, Medical University of Graz, Stiftingtalstrasse 24, 8010 Graz, Austria; Austrian Center of Industrial Biotechnology (ACIB), Petersgasse 14, 8010 Graz, Austria, Omics Center Graz, Austria (1)
Laboratory of General Surgery, The First Affiliated Hospital, SunYat-Sen University, Guangzhou, 510080, China (1)
Centre for Craniofacial & Regenerative Biology, King’s College London/ Randall Centre for Cell & Molecular Biophysics, King’s College London (1)
Walter and Eliza Hall Institute of medical research (1)
Lab Head, iGOSH (Centre for Inborn Errors of Metabolism) UCL Institute of Child Health at Great Ormond Street Hospital University College London 30 Guilford Street London WC1N 1EH Tel +44(0)207 905 2873 Fax +44(0)207 905 6191 (1)
Department of Burn Surgery, the First Affiliated Hospital of Naval Medical University, Shanghai, People’s Republic of China; Research Unit of key techniques for treatment of burns and combined burns and trauma injury, Chinese Academy of Medical Sciences, Shanghai, China. (1)
Department of Obstetrics, Gynecology, and Reproductive Sciences, Center for Reproductive Sciences, University of California, San Francisco, CA 94143, USA Eli and Edythe Broad Center for Regeneration Medicine and Stem Cell Research, University of California, San Francisco, CA 94143, USA Department of Anatomy, University of California, San Francisco, CA 94143, USA (1)
Novo Nordisk Foundation Center for Protein Research, Department of Cellular and Molecular Medicine, Faculty of Health and Medical Sciences, University of Copenhagen, 2200 Copenhagen, Denmark (1)
King's College London Centre for Inflammation Biology & Cancer Immunology School of Immunology & Microbial Sciences 1st Floor New Hunt's House, Guy's Campus London, UK SE1 1UL (1)
Precision Medicine Research Center, School of Pharmacy, Binzhou Medical University, Yantai, Shandong Province, 264003, PR China. (1)
Department of Analytical Chemistry, University of Vienna, Vienna, Austria Joint Metabolome Facility, University of Vienna & Medical University of Vienna, Vienna, Austria (1)
LMU Muenchen (1)
Dept of Immunology and Oncology, Centro Nacional de Biotecnología (CNB-CSIC), Darwin 3, Campus UAM Cantoblanco, 28079 Madrid, Spain (1)
- Life and Health Sciences Research Institute (ICVS), School of Medicine, University of Minho, Portugal - ICVS/3B’s Associate Lab, PT Government Associated Lab, Portugal (1)
School of Medical Sciences, Faculty of Medicine and Health, The University of Sydney, New South Wales, Australia (1)
Department of Biochemistry and Molecular Biology, University of Calgary, Alberta, Canada; Department of Physiology and Pharmacology, University of Calgary, Alberta, Canada; The Hotchkiss Brain Institute, University of Calgary, Alberta, Canada; McCaig Institute for Bone and Joint Health, University of Calgary, Alberta, Canada. (1)
Neufeld and Tamman Cardiovascular Research Institutes, Sheba Medical Center, Sackler School of Medicine, Tel Aviv University, Israel. (1)
The Wellcome Centre for Cell-Matrix Research, University of Manchester, Manchester, UK (1)
CRUK Scotland Institute, Garscube Estate, Switchback Road, Glasgow, G61 1BD Department of Biochemistry, University of Cambridge, Cambridge, CB2 1GA, UK (1)
Department of Pharmacology, Faculty of Medicine, University of Helsinki, Helsinki, Finland (1)
Department of Biochemistry and Molecular Genetics, School of Medicine, University of Colorado, Aurora, CO, USA (1)
Research Unit Protein Science, Helmholtz Zentrum München (1)
Institute for Stem Cell Research, Helmholtz Center Munich, Germany (1)
Helmholtz Zentrum München, Institute of Lung Biology and Disease, Group Regenerative Biology and Medicine, Munich, Germany, Member of the German Centre for Lung Research (DZL) (1)
Institute of Animal Reproduction and Food Research, Polish Academy of Sciences in Olsztyn, Poland (1)

Keyword

Advanced endoscopic imaging (1)
Tomography scanners, X-Ray computed (1)
Positron-Emission Tomography (1)
Colorectal lesions (1)
Residual adenoma (1)
Recurrent adenoma (1)
Fluorodeoxyglucose F18 (1)
Endoscopic mucosal resection (1)
Endoscopic resection (1)
Pathology (1)
Rescue surgery (1)
Colonoscopy (1)

IsPrivate

False (1)

Study type

Transcription profiling by array (220)
RNA-seq of coding RNA (58)
RNA-seq of coding RNA from single cells (20)
ChIP-seq (17)
Comparative genomic hybridization by array (14)
Methylation profiling by array (10)
Other (8)
Interventional (6)
Unknown experiment type (5)
Transcription profiling by SAGE (4)
Methylation profiling by high throughput sequencing (4)
RNA-seq of total RNA (4)
RNA-seq of non coding RNA (4)
DNA-seq (3)
Cell line - Single-cell sequencing (2)
Cell line - High-throughput sequencing (2)
ChIP-chip by array (2)
Spatial transcriptomics by high-throughput sequencing (2)
Bisulfite-seq (2)
Single nucleus RNA sequencing (2)
CUT&Tag (1)
MNase-seq (1)
ChIP-chip by tiling array (1)
High-throughput sequencing (1)
Animal - High-throughput sequencing (1)
Transcription profiling by tiling array (1)
RNAi profiling by array (1)
ScATAC-seq (1)
MicroRNA profiling by array (1)
CUT&RUN (1)

Release Date

2025 (505)
2023 (505)
2022 (470)
2021 (441)
2024 (413)
2020 (370)
2019 (281)
2018 (245)
2015 (205)
2017 (201)
2016 (179)
2014 (170)
2013 (108)
2011 (81)
2010 (81)
2012 (78)
2026 (73)
2008 (40)
2009 (27)
2007 (20)
2006 (19)
2005 (11)
2004 (9)
2002 (8)
2001 (5)
2003 (4)
2000 (4)
1998 (3)
1999 (2)
1997 (1)

Location

Japan (2)
Portugal (1)
China (1)
Canada (1)
Netherlands (1)
Australia (1)

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Interaction between Cervical Microbiota and Host Gene Regulation in Caesarean Section Scar Diverticulum

Cesarean section scar diverticulum (CSD) has become a formidable obstacle preventing women receiving CS from reproducing. However, the pathogenesis of CSD remains unexplored. In this study, we characterized the cervical microbiota, metabolome and endometrial transcriptome of women with CSD. Based...

2022-07-25 | MTBLS4967 | MetaboLights

Keratinocyte and fibroblast gene expression in skin and keloid scar tissue

Keloids are scars that extend beyond original wounds and are resistant to treatment. In order to improve understanding of the molecular basis of keloid scarring, we have assessed the genomic profiles of keloid fibroblasts and keratinocytes. Skin and scar tissues were obtained for isolation of prima...

ORGANISM(S): Homo sapiens

2013-05-28 | E-GEOD-44270 | biostudies-arrayexpress

CD68+ region of rat scar tissue by AutoSTOMP

To test the ability of the Automated Spatially Targeted Optical Micro Proteomics (AutoSTOMP) protocol to selectively biotinylate structures of interest within tissue sections we first examined a rat myocardial infarction model. In this model, trauma caused by ligation and infiltrating immune cells c...

ORGANISM(S): Rattus norvegicus (Rat)

2021-08-10 | PXD026818 | Pride

Distinct diversity of skin cell populations of rhinophyma and hypertrophic scar illustrated by scRNA-seq

The clinical manifestations and presentation of rhinophyma closely resemble those of hypertrophic scar tissue, both presenting as firm, fibrotic growths. Despite this phenotypic similarity, a critical divergence is observed following surgical intervention: the affected skin in rhinophyma can revert ...

ORGANISM(S): Homo sapiens

2026-02-18 | E-MTAB-16629 | biostudies-arrayexpress

Lineage recording in human cerebral organoids (Visium)

Induced pluripotent stem cell (iPSC) derived organoid systems provide models to study human organ development. Single-cell transcriptome sequencing enables highly-resolved descriptions of cell state heterogeneity within these systems and computational methods can reconstruct developmental trajectori...

ORGANISM(S): Homo sapiens

2021-11-03 | E-MTAB-10972 | biostudies-arrayexpress

Lineage recording in human cerebral organoids (whole organoids)

ORGANISM(S): Homo sapiens

2021-11-03 | E-MTAB-10974 | biostudies-arrayexpress

Lineage recording in human cerebral organoids (microdissected)

ORGANISM(S): Homo sapiens

2021-11-03 | E-MTAB-10973 | biostudies-arrayexpress

Lineage recording in human cerebral organoids (iTracer-perturb)

ORGANISM(S): Homo sapiens

2021-11-03 | E-MTAB-10971 | biostudies-arrayexpress

Comprehensive Proteomic Characterization of Scar Formation in Urethral Stricture Disease

Male urethral stricture disease (USD) is characterized by scar formation, whose molecular mechanism is still lack. In this study, we performed comprehensive proteomic landscape of USD with 12 scar tissues and 5 matched normal adjacent tissues (NATs). Comparative analysis disclosed the ECM signaling ...

ORGANISM(S): Homo Sapiens

PXD053186 |

RNA-seq of human hypertrophic scar fibroblast cell treated with fkbp10 siRNA against untreated controls

human hypertrophic scar fibroblast cell treated with fkbp10 siRNA and control siRNA for 48 hours

ORGANISM(S): Homo sapiens

2020-08-26 | E-MTAB-9471 | biostudies-arrayexpress

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