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Genomics[E-TABM-722] Transcription factor binding evolution in five vertebrates
Five-vertebrate ChIP-seq reveals the evolutionary dynamics of trancription factor binding. The SRF files for this experiment can be found in the European Read Archive with study accession number ERP000054. ArrayExpress Submission Date: Apr 07 2010 ArrayExpress Release Date: Apr 08 2010 Publication A...
ORGANISM(S): Homo sapiens Mus musculus Gallus gallus Canis lupus familiaris Monodelphis domestica 
2010-06-02 | GSE22078 | GEO
Genomics[E-TABM-828] ChIP-Seq in human MCF7 and HEPG2 cells
ChIP-Seq study in human MCF7 and HEPG2 cells using antibodies against CTCF (Millipore, 07-729), STAG1 (abcam, ab4457), RAD21 (abcam, ab992), ERa (santa cruz, sc-543), CEBPa (santa cruz, sc-9314) ArrayExpress Release Date: 2010-05-12 Publication Title: A CTCF-independent role for cohesin in tissue-sp...
ORGANISM(S): Homo sapiens 
2011-02-05 | GSE25021 | GEO
GenomicsGlobal impact of RNA polymerase II elongation inhibition on alternative splicing regulation (ChIP-Seq)
The rate of RNA polymerase II (pol II) elongation can influence splice site selection in nascent transcripts, yet the extent and physiological relevance of this kinetic coupling between transcription and alternative splicing is not well understood. We performed experiments to perturb pol II elongati...
ORGANISM(S): Homo sapiens 
2010-12-09 | E-GEOD-25494 | biostudies-arrayexpress
TranscriptomicsChromatin immunopreciptiation of mouse hepatocytes to validate deep-sequencing libraries
Chromatin immunoprecipitation followed by ultra-high throughput (UHTP) sequencing (ChIP-seq) is a powerful tool to establish protein-DNA interactions genome-wide, and the primary limitation of its broad application at present is the often-limited access to sequencers. Here, we report a protocol, Mab...
ORGANISM(S): Mus musculus 
2008-06-11 | E-TABM-485 | biostudies-arrayexpress
GenomicsHomo sapiens
[E-TABM-828] ChIP-Seq in human MCF7 and HEPG2 cells
PRJNA134393 | ENA
GenomicsGenome-wide map of BACH1 binding in HEK 293T cells
BTB and CNC homology 1 (BACH1) is a heme-binding transcription factor repressing the transcription from a subset of MAF recognition elements (MAREs) at low intracellular heme levels. Upon heme binding, BACH1 is released from the MAREs, resulting in increased expression of antioxidant response genes....
ORGANISM(S): Homo sapiens 
2011-05-13 | E-GEOD-28051 | biostudies-arrayexpress
GenomicsCTCF binding evolution in mammals
ChIP-seq study in human, macaque, mouse, rat and opossum for CTCF (milipore: 07-729 and custom AB in opossum), STAG1 in opossum (abcam: ab4457)
ORGANISM(S): Monodelphis domesticus 
2011-11-01 | E-MTAB-437 | biostudies-arrayexpress
Genomics[E-TABM-722] Transcription factor binding evolution in five vertebrates
[E-TABM-722] Transcription factor binding evolution in five vertebrates
PRJNA128961 | ENA
GenomicsChIP-Seq of human MCF7 and HEPG2 cells using antibodies against CTCF, STAG1, RAD2, ERa and CEBPa
ChIP-Seq study in human MCF7 and HEPG2 cells using antibodies against CTCF (Millipore, 07-729), STAG1 (abcam, ab4457), RAD21 (abcam, ab992), ERa (santa cruz, sc-543), CEBPa (santa cruz, sc-9314)
ORGANISM(S): Homo sapiens 
2010-05-13 | E-TABM-828 | biostudies-arrayexpress
GenomicsCombinatorial transcription factor binding evolution in five placental mammals
Zoo-ChIP: Functional analysis of experimentally determined combinatorial transcription factor binding in multiple mammalian species
ORGANISM(S): Rattus norvegicus 
2014-09-27 | E-MTAB-1509 | biostudies-arrayexpress
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