Schmitz R R - OmicsDI

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Unknown (977)
Transcriptomics (50)
Proteomics (29)
Metabolomics (10)
Genomics (6)
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Other (1)

Organisms

Homo sapiens (35)
Mus musculus (23)
Arabidopsis thaliana (10)
Zea mays (6)
Arabidopsis thaliana x Arabidopsis halleri (1)
Methanosarcina mazei (1)
Leishmania major (1)
Helicobacter cinaedi CCUG 18818 = ATCC BAA-847 (1)
Neurospora crassa (1)
Glycine max (1)
Methanosarcina mazei Go1 (1)
Mustela putorius furo (1)
Rattus norvegicus (1)
Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S (1)
Sulfurospirillum multivorans DSM 12446 (1)

Repository

biostudies-arrayexpress (56)
pride (28)
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Disease

Acute myeloid leukemia (1)
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Centronuclear myopathy 5 (1)
Disease free (1)
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Technology Type

Mass Spectrometry (28)
Shotgun proteomics (15)
Mass spectrometry (9)
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Affinity purification coupled with mass spectrometry proteomics (3)
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Top-down proteomics (2)

Instrument Platform

Direct infusion MS - positive (4)
Liquid Chromatography MS - negative - reverse phase (4)
Axon GenePix 4000B scanning hardware (3)
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Bruker maXis ESI Quadrupole TOF (2)
Liquid Chromatography MS - positive - reverse phase (2)
SnakePipes 3.4 (1)
NEBNext Ultra II DNA Library Prep Kit (1)
Agilent G2565CA Microarray Scanner System (1)
None (1)
Illumina Genome Analyzer II (1)
Illumina HiSeq 2500 (1)
Q Exactive (1)
Direct infusion MS - alternating (1)
Direct infusion MS - negative (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - alternating - reverse phase (1)
QTRAP 5500 (Applied Biosystems) (1)
QTRAP 6500 (Applied Biosystems) (1)

Publication Date

2015 (10)
2014 (9)
2016 (8)
2012 (8)
2011 (8)
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2020 (5)
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2005 (2)
2019 (2)
2018 (2)
2009 (1)
2008 (1)
2017 (1)

CHEBI ID

CHEBI:64561 (6)
CHEBI:64563 (6)
CHEBI:64549 (5)
CHEBI:64560 (5)
CHEBI:84659 (5)
CHEBI:84661 (5)
CHEBI:84662 (5)
CHEBI:84665 (5)
CHEBI:134451 (4)
CHEBI:136234 (4)
CHEBI:136256 (4)
CHEBI:136257 (4)
CHEBI:141588 (4)
CHEBI:155834 (4)
CHEBI:155835 (4)
CHEBI:16113 (4)
CHEBI:3663 (4)
CHEBI:64424 (4)
CHEBI:64433 (4)
CHEBI:64483 (4)
CHEBI:64516 (4)
CHEBI:64517 (4)
CHEBI:64523 (4)
CHEBI:64566 (4)
CHEBI:66849 (4)
CHEBI:66850 (4)
CHEBI:66855 (4)
CHEBI:66857 (4)
CHEBI:66858 (4)
CHEBI:67054 (4)

Metabolite Name

Linoleic acid (2)
PC(16:0/0:0) (2)
PC(18:2/18:2) (2)
(+-)-Dalbergioidin (1)
(1->3)-beta-D-Galactopyranans (1)
(2,6-beta-D-Fructosyl)n (1)
1,3-beta-D-Oligoglucan (1)
1,4-beta-D-Glucan (1)
1,6-beta-D-Glucan (1)
1-16:0-lysoPE (1)
1-O-Hexadecyl-lyso-sn-glycero-3-phosphocholine (1)
1-O-feruloyl-beta-D-glucose (1)
1-kestotriose (1)
10,16-Dihydroxyhexadecanoic acid (1)
12-hydroxyjasmonic acid 12-O-beta-D-glucoside (1)
1F-beta-D-Fructosylsucrose (1)
2'-Hydroxygenistein (1)
2,6,7,4'-Tetrahydroxyisoflavanone (1)
2-Carboxy-D-arabinitol (1)
2-Hydroxy-2,3-dihydrogenistein (1)
2-Hydroxymyristic acid (1)
2-O-Methylswertianin (1)
26-Desglucoavenacoside A (1)
3,5-Dimethoxy-1,6-dihydroxyxanthone (1)
3alpha-hydroxy-5alpha-androstan-17-one 3-sulfate (1)
6-alpha-D-(1,4-alpha-D-Glucano)-glucan (1)
6-alpha-Maltosylglucose (1)
6-kestotriose (1)
6F-alpha-D-Galactosylsucrose (1)
Abscisic acid (1)

IsPrivate

False (1)

Modelling Approach

Differential equation model (1)

Study type

Transcription profiling by array (28)
RNA-seq of coding RNA (10)
ChIP-chip by array (5)
Methylation profiling by high throughput sequencing (4)
Comparative genomic hybridization by array (2)
ChIP-seq (2)
Unknown experiment type (1)
Transcription profiling by tiling array (1)
Other (1)
CUT&RUN (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2025 (124)
2022 (111)
2024 (103)
2021 (98)
2023 (93)
2020 (69)
2019 (57)
2015 (51)
2018 (48)
2016 (43)
2017 (39)
2012 (38)
2014 (32)
2011 (31)
2010 (20)
2026 (18)
2013 (16)
2009 (13)
2008 (10)
2005 (4)
2006 (3)
2004 (3)
2007 (2)
2003 (2)
2000 (2)
2002 (1)
2001 (1)
1999 (1)

Lab affiliation

School of Life and Environmental Sciences, Charles Perkins Centre, Faculty of Science, The University of Sydney, NSW, Australia. (2)
Bioanalytical Mass Spectrometry Group, Max Planck Institute for Multidisciplinary Sciences, 37077 Göttingen, Germany. (1)
Core Unit Proteomics, BIH at Charite and MDC, Robert Roessle Strasse 10, 13125 Berlin (1)
Department of Medicine II Haematology/Oncology Goethe University Theodor-Stern-Kai 7 60590 Frankfurt Germany (1)
Department of Molecular Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390 (1)
Department of Molecular Systems Biology, Helmholtz Centre for Environmental Research – UFZ, Permoserstraße 15, 04318 Leipzig, Germany (1)
Department of Peptide-based Immunotherapy, University and University Hospital Tübingen, Tübingen, Germany (1)
Division of Neonatology, Department of Pediatrics, University of Miami Miller School of Medicine and Holtz Children's Hospital, Jackson Health System, Miami, FL, USA (1)
Faillace Department of Psychiatry and Behavioral Sciences University of Texas Health Science Center at Houston (1)
Fernando Garcia Martinez Ph.D. Proteomics & MS Specialist Proteomics Unit, Spanish National Cancer Research Centre (CNIO) Melchor Fernández Almagro 3. E28029 MADRID, SPAIN. Phone +34 912246900 ext 3112 (1)
Forschungslabor Fetale Programmierung, Klinik und Poliklinik für Kinder- und Jugendmedizin, Uniklinik Köln, Gebäude 44a, Robert-Koch Str. 16, 50931 Köln (1)
German Cancer Reseach Center (DKFZ) (1)
Head of The Steen-Laboratory, Director of Proteomics, Boston Children's Hospital, Harvard Medical School (1)
IMP - Research Institute of Molecular Pathology, Austria (1)
Institut für Experimentelle Medizin Christian-Albrechts-Universität zu Kiel Niemannsweg 11 24105 Kiel, Germany (1)
Institute for Medical Microbiology Universitätsklinikum der RWTH Aachen, Germany (1)
Institute of Functional Genomics, Universtiy of Regensburg, Germany (1)
Institute of Molecular Medicine I, Medical Faculty, Heinrich Heine University Düsseldorf (1)
Institute of Molecular Medicine I, Medical Faculty, Heinrich Heine University Düsseldorf, Germany (1)
Lab head (1)
Laboratory of Cancer Signaling, University of Liège, C.H.U. Sart Tilman, Liège 4000, Belgium (1)
National Heart and Lung Institute, Faculty of Medicine, Imperial College London, UK (1)
Rudolf Virchow Zentrum – University of Würzburg (1)
School of Life and Environmental Sciences, Charles Perkins Centre, Faculty of Science, The University of Sydney, NSW, Australia (1)
Thayer School of Engineering, Dartmouth College; Hanover, NH 03755, USA Department of Convergence Medicine, Korea University College of Medicine, Seoul, Republic of Korea Vaccine Innovation Center, Korea University College of Medicine, Seoul, Republic of Korea (1)
University of Sydney (1)
nencki institute of experimental biology (1)

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Comprehensive systems biology analysis of a seven-month cigarette smoke inhalation study in C57BL/6 mice

Smoking of combustible cigarettes has a major impact on human health. Using a systems toxicology approach in a model of chronic obstructive pulmonary disease (C57BL/6 mice), we assessed the health consequences in mice of smoke derived from a prototype modified risk tobacco product (pMRTP) as compare...

2015-11-19 | MTBLS143 | MetaboLights

Base-resolution detection of N4-methylcytosine in genomic DNA using 4mC-TAB-seq

N4-methylcytosine is a major DNA modification integral to restriction-modification (R-M) systems in bacterial genomes. Here we describe 4mC-Tet-Assisted Bisulfite-sequencing (4mC-TAB-seq), a method that accurately and rapidly reveals the genome-wide locations of N4-methylcytosines at single-base res...

ORGANISM(S): Caldicellulosiruptor kristjanssonii

2015-07-11 | E-GEOD-63371 | biostudies-arrayexpress

R-flurbiprofen attenuates experimental autoimmune encephalomyelitis in mice.

Not available

S-EPMC4237468 | biostudies-literature

Relapsed/Refractory International Prognostic Index (R/R-IPI): An international prognostic calculator for relapsed/refractory diffuse large B-cell lymphoma.

Not available

S-EPMC8763015 | biostudies-literature

Rate, spectrum, and evolutionary dynamics of spontaneous epimutations

Stochastic changes in cytosine methylation are a source of heritable epigenetic and phenotypic diversity in plants. Using the model plant Arabidopsis thaliana, we derive robust estimates of the rate at which methylation is spontaneously gained (forward epimutation) or lost (backward epimutation) at ...

ORGANISM(S): Arabidopsis thaliana

2015-05-13 | E-GEOD-64463 | biostudies-arrayexpress

SpliceWiz: interactive analysis and visualization of alternative splicing in R.

Not available

S-EPMC10753292 | biostudies-literature

Topoisomerase 1 prevents replication stress at R-loop-enriched transcription termination sites.

Not available

S-EPMC7414224 | biostudies-literature

Retinal topography maps in R: new tools for the analysis and visualization of spatial retinal data.

Not available

S-EPMC4527213 | biostudies-literature

High CXCR4 expression impairs rituximab response and the prognosis of R-CHOP-treated diffuse large B-cell lymphoma patients.