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ProteomicsPost-translational responses to elevated c-di-GMP levels in Pseudomonas aeruginosa
To analyze the impact of elevated c-di-GMP concentrations in P. aeruginosa, we expressed pleD* on an inducible vector (pHERD20T) in the PAO1 wild-type strain. PleD is a DGC from Caulobacter cresentusand the pleD* construct variant encodes for a constitutively active enzyme due to four amino acid exc...
ORGANISM(S): Pseudomonas aeruginosa PAO1 
2022-07-25 | PXD027098 | Pride
Multi-omics dataset Pled-overexpression Elevated c-di-gmp levels 
ProteomicsFractionation of proteins on non-aqueous gradient
Tissue powder was separated on a non-aqueous gradient to fractionate proteins and metabolites for subcellular locations. In total, twelve fractions (01-12) were collected from three independent gradients (A, B, C)
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2018-10-24 | PXD000609 | Pride
Metabolite-protein interactions Subcellular location Non-aqueous fractionation 
UnknownNFAT-induced histone acetylation relay switch promotes c-Myc-dependent growth in pancreatic cancer cells.
Not available
S-EPMC2895621 | biostudies-literature
UnknownSequential activation of NFAT and c-Myc transcription factors mediates the TGF-beta switch from a suppressor to a promoter of cancer cell proliferation.
Not available
S-EPMC2930723 | biostudies-literature
ProteomicsQuantitative analysis of proteomic changes induced by potential quorum sensing in Haloferax volcanii
Quorum sensing (QS) is a mechanism of intercellular communication that enables microbes to alter gene expression and adapt to the environment. While QS has been extensively studied in bacteria, little is known about cell-cell communication in archaea. We could show that for Haloferax volcanii, the t...
ORGANISM(S): Haloferax volcanii (Halobacterium volcanii) Archaea 
2025-06-17 | PXD059278 | Pride
Archaeal proteome project Ursgal Archaea Haloferax volcanii Label-free quantification Quorum sensing Cell shape 
ProteomicsNitrate Starvation time course membrane protein phosphoproteomics
Nitrate nutrtition was withdrawn from Arabiodpsis plants to study early responses upon nitrate depletion. Plants were grown under full nutrition (3mM nitrate) for three weeks and then transferred to nutrient solution without nitrate for 15 minutes and 3 hours.
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2024-05-21 | PXD015390 | Pride
Arabidopsis Nitrate starvation Membrane proteins Phosphorylation 
UnknownStable Frequencies of HLA-C*03:04/Peptide-Binding KIR2DL2/3+ Natural Killer Cells Following Vaccination.
Not available
S-EPMC6199360 | biostudies-literature
ProteomicsComparative, quantitative proteomic analysis of cell shape transitions in Haloferax volcanii
Cell shape plays a crucial role in microbial survival. While Haloferax volcanii, a model haloarchaeon, forms rods and disks, depending on environmental conditions, little is known about mechanisms underpinning archaeal cell-shape determination. We identified mutants that exclusively form rods and ca...
ORGANISM(S): Haloferax volcanii (Halobacterium volcanii) Archaea 
2024-02-17 | PXD040781 | Pride
Archaeal proteome project Ursgal Archaea Haloferax volcanii Label-free quantification Cell shape 
UnknownModulation of cellular migration and survival by c-Myc through the downregulation of urokinase (uPA) and uPA receptor.
Not available
S-EPMC2838082 | biostudies-literature
Proteomicssearch substrates of receptor kinase complex SIRK1/QSK1
In this project, we are searching phosphorylation targets of receptor kinases complexes SIRK1/QSK1, especially to find the phosphorylation status of aquaporin PIP2F in sirk single mutant and sirk/qsk1 double mutant.
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2019-11-12 | PXD011284 | Pride
Arabisopsis Receptor kinase Phosphoproteomics 
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