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Unknown (1389)
Transcriptomics (44)
Proteomics (42)
Genomics (14)
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Genomic (1)

Organisms

Homo sapiens (41)
Mus musculus (16)
Arabidopsis thaliana (16)
Saccharomyces cerevisiae (5)
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Escherichia coli (2)
Haloferax volcanii (2)
Colletotrichum higginsianum (1)
Blumeria graminis (1)
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Influenza A virus (A/Panama/2007/1999(H3N2)) (1)
Lolium perenne (1)
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Plasmodium falciparum 58.1 (1)
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Severe acute respiratory syndrome coronavirus 2 (1)
Taraxacum sp. (1)

Organisms

Mus musculus (1)

Repository

biostudies-arrayexpress (49)
pride (40)
MetaboLights (11)
EGA (7)
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geo (1)
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Tissue

Cell culture (8)
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Macrophage (1)
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Protonema (1)
Skin fibroblast (1)
Stem cell (1)
T cell (1)

Disease

Influenza A (1)
Normal (1)
COVID-19 (1)
Coronavirus infectious disease (1)
Dilated cardiomyopathy (1)
Disease free (1)
Hermansky-Pudlak syndrome (1)
Influenza (1)
Multiple myeloma (1)
Plasmodium falciparum malaria (1)

Technology Type

Mass Spectrometry (40)
Shotgun proteomics (25)
Mass spectrometry (10)
Bottom-up proteomics (7)
Data-dependent acquisition (4)
Gel-based experiment (4)
Affinity purification coupled with mass spectrometry proteomics (3)
Data-independent acquisition (3)
Codelink Human Whole Genome Bioarray (1)
Illumina HiSeq 2000 (1)
Mass spectrometry assay (1)
SWATH MS (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (4)
MicrOTOF-Q II (2)
Liquid Chromatography MS - negative - reverse phase (2)
418 [Affymetrix] (1)
Illumina HiSeq 2000 (1)
MaXis II (1)
Diode array detection MS - - - micrOTOF-Q II ESI-Qq-TOF (Bruker) (1)
Direct infusion MS - negative (1)
Direct infusion MS - positive (1)
Liquid Chromatography MS - - - micrOTOF-Q II ESI-Qq-TOF (Bruker) (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - alternating - reverse-phase (1)
MaXis (Bruker) (1)
MicrOTOF-Q I ESI-Qq-TOF (Bruker) (1)
MicrOTOF-Q II ESI-Qq-TOF (Bruker) (1)
Q Exactive (1)
LTQ-Orbitrap (1)

Publication Date

2025 (13)
2012 (11)
2011 (10)
2024 (9)
2013 (8)
2022 (7)
2026 (5)
2019 (4)
2016 (4)
2015 (4)
2010 (4)
2020 (4)
2023 (4)
2021 (4)
2014 (3)
2009 (3)
2018 (3)
2007 (2)
2017 (2)
2008 (1)

CHEBI ID

CHEBI:100241 (2)
CHEBI:10072 (2)
CHEBI:16335 (2)
CHEBI:16704 (2)
CHEBI:16708 (2)
CHEBI:16737 (2)
CHEBI:16750 (2)
CHEBI:16811 (2)
CHEBI:17268 (2)
CHEBI:17306 (2)
CHEBI:17310 (2)
CHEBI:17385 (2)
CHEBI:17750 (2)
CHEBI:17822 (2)
CHEBI:18186 (2)
CHEBI:18344 (2)
CHEBI:2676 (2)
CHEBI:27897 (2)
CHEBI:27931 (2)
CHEBI:28044 (2)
CHEBI:28197 (2)
CHEBI:28212 (2)
CHEBI:28478 (2)
CHEBI:28790 (2)
CHEBI:29016 (2)
CHEBI:2955 (2)
CHEBI:30745 (2)
CHEBI:30769 (2)
CHEBI:30997 (2)
CHEBI:31169 (2)

Metabolite Name

(R)-3-hydroxybutyrylcarnitine (1)
1,3,7-trimethylurate (1)
1,3-dimethylurate (1)
1,6-anhydroglucose (1)
1,7-dimethylurate (1)
1-(1-enyl-palmitoyl)-2-arachidonoyl-GPC (P-16:0/20:4)* (1)
1-(1-enyl-palmitoyl)-2-arachidonoyl-GPE (P-16:0/20:4)* (1)
1-(1-enyl-palmitoyl)-2-linoleoyl-GPC (P-16:0/18:2)* (1)
1-(1-enyl-palmitoyl)-2-linoleoyl-GPE (P-16:0/18:2)* (1)
1-(1-enyl-palmitoyl)-2-palmitoleoyl-GPC (P-16:0/16:1)* (1)
1-(1-enyl-palmitoyl)-2-palmitoyl-GPC (P-16:0/16:0)* (1)
1-(1-enyl-palmitoyl)-GPE (P-16:0)* (1)
1-(1-enyl-stearoyl)-2-linoleoyl-GPE (P-18:0/18:2)* (1)
1-(1-enyl-stearoyl)-GPE (P-18:0)* (1)
1-arachidonoyl-GPA (20:4) (1)
1-arachidonoyl-GPI (20:4)* (1)
1-lignoceroyl-GPC (24:0) (1)
1-linolenoyl-GPC (18:3)* (1)
1-linoleoyl-2-arachidonoyl-GPC (18:2/20:4n6)* (1)
1-linoleoyl-GPC (18:2) (1)
1-linoleoyl-GPE (18:2)* (1)
1-linoleoyl-GPI (18:2)* (1)
1-methyl-4-imidazoleacetate (1)
1-methylhistidine (1)
1-methylnicotinamide (1)
1-methylurate (1)
1-methylxanthine (1)
1-myristoyl-2-palmitoyl-GPC (14:0/16:0) (1)
1-oleoyl-2-docosahexaenoyl-GPC (18:1/22:6)* (1)
1-oleoyl-2-linoleoyl-GPE (18:1/18:2)* (1)

First Public Date

2014 (1)

Modification

15.994915 (1)
57.021464 (1)

Study type

Transcription profiling by array (28)
RNA-seq of coding RNA (8)
ChIP-seq (3)
Methylation profiling by high throughput sequencing (3)
Unknown experiment type (2)
ChIP-chip by array (2)
Comparative genomic hybridization by array (1)
Other (1)
Methylation profiling by array (1)

Release Date

2021 (169)
2023 (162)
2022 (151)
2025 (142)
2024 (131)
2020 (105)
2018 (87)
2019 (82)
2015 (58)
2016 (52)
2014 (52)
2017 (49)
2012 (45)
2011 (32)
2026 (30)
2013 (29)
2009 (18)
2010 (16)
2008 (6)
2007 (4)
2006 (4)
2005 (4)
2004 (3)
2003 (3)
2000 (2)
1998 (2)

Lab affiliation

Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (4)
Department of Plant Systems Biology, University of Hohenheim, 70599 Stuttgart, Germany (3)
Department of Plant Systems Biology, University of Hohenheim, 70593 Stuttgart, Germany (2)
King’s British Heart Foundation Centre of Research Excellence, King's College London, United Kingdom (2)
Associate Professor (1)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (1)
Bavarian Center for Biomolecular Mass Spectrometry at Klinikum rechts der Isar, Technical University of Munich (1)
Bio3/Bioinformatics and Molecular Genetics, University of Freiburg, 30Schänzlestrasse 1, D-79104 Freiburg, Germany (1)
Cellzome A GSK Company, Heidelberg 69117, Germany (1)
Department of Biology, University of Pennsylvania (1)
Department of Cellular and Molecular Pharmacology University of California San Francisco (UCSF) San Francisco, CA 94158 USA (1)
Department of Experimental Pharmacology and Toxicology, Cardiovascular Research Center, University Medical Center Hamburg-Eppendorf, Hamburg, Germany (1)
Department of Plant Systems Biology (1)
Department of Plant Systems Biology University of Hohenheim 70593 Stuttgart (1)
Discovery Proteomics Facility University of Oxford (1)
Experimental Systems Immunology Laboratory, Max-Planck Institute of Biochemistry, Martinsried, Germany. (1)
Forschungszentrum Juelich GmbH ZEA-3 Analytics Wilhelm-Johnen-Str. D-52425 Juelich Germany (1)
Institute for Molecular Bacteriology, TWINCORE GmbH, Center of Clinical and Experimental Infection Research, a joint venture of the Hannover Medical School and the Helmholtz Center for Infection Research, Hannover, Germany. (1)
Institute of Biomedicine, Department of Microbiology, the Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden (1)
Institute of Experimental Pharmacology and Toxicology, University Medical Center Hamburg-Eppendorf, Hamburg, Germany (1)
Institute of Plant Biology and Biotechnology, University of Muenster (1)
Institute of Plant Biology and Biotechnology, University of Münster, Münster 48143, Germany (1)
Metabolic Networks (1)
Molecular Proteomics Laboratory, Biomedical Research Center (BMFZ), Heinrich Heine University, Medical Faculty, Düsseldorf, Germany (1)
Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research (1)
Proteome Dynamics, Max Delbruck Center for Molecular Medicine, Germany (1)
Proteomics, Leibniz-Institut für analytische Wissenschaften -ISAS - e.V., Germany (1)
University Medical Center Hamburg-Eppendorf, Institute of Experimental Pharmacology and Toxicology, University Medical Center Hamburg-Eppendorf, Hamburg, Germany (1)
University of Greifswald, Institute of Microbiology, 17489 Greifswald, Germany (1)
University of Muenster IBBP Plant Physiology Schlossplatz 7 48149 Muenster (1)

Tags

xref:PubMed:17913887 (1)

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Expression data from developing regulatory T cells

CD25+ regulatory T cells develop in the thymus (nTregs), but may also be generated in the periphery upon stimulation of naive CD4 T cells under appropriate conditions (iTregs). The mechanisms that regulate the generation of peripheral iTregs are largely unknown. We used microarrays to gain insights ...

ORGANISM(S): Homo sapiens

2011-01-20 | E-GEOD-24634 | biostudies-arrayexpress

Expression data from MS individuals homozygous for IL7R haplotypes

Genome-wide association studies in multiple sclerosis (MS) identified a polymorphism (rs6897932) located in the coding region of the alpha chain of the cytokine receptor interleukin 7 receptor (IL7R) as a component that increases susceptibility to develop the disease. This single nucleotide polymorp...

ORGANISM(S): Homo sapiens

2015-04-14 | E-GEOD-37584 | biostudies-arrayexpress

Immunodominant T-cell epitopes of MOG reside in its transmembrane and cytoplasmic domains in EAE.

Not available

S-EPMC4202928 | biostudies-literature

Mutations in Hepatitis D Virus Allow It to Escape Detection by CD8⁺ T Cells and Evolve at the Population Level.

Not available

S-EPMC6486497 | biostudies-literature

Fracture healing in osteoporotic mice

Genome-wide comparative gene expression analysis of callus tissue of osteoporotic mice (Col1a1-Krm2 and Lrp5-/-) and wild-type were performed to identify candidate genes that might be responsible for the impaired fracture healing observed in Col1a1-Krm2 and Lrp5-/- mice. To investigate bone healing ...

ORGANISM(S): Mus musculus

2013-10-25 | E-GEOD-51686 | biostudies-arrayexpress

PD-1-targeted immunotherapy in NASH-triggered liver cancer induces pro-tumorigenic environment through CD8+PD-1+ T-cells

Immunotherapy has opened hitherto unknown possibilities to treat cancer. Whereas some cancer types (e.g. melanoma) can be efficiently treated, others lack measurable positive effects (e.g. PDAC). Moreover, stratification of responders/non-responders is only possible in some cancer types (e.g. melano...

ORGANISM(S): Mus musculus (Mouse)

2021-03-03 | PXD017236 | Pride

FAT1 expression in T-cell acute lymphoblastic leukemia (T-ALL) modulates proliferation and WNT signaling.

Not available

S-EPMC9849452 | biostudies-literature

SNX17 affects T cell activation by regulating TCR and integrin recycling.

Not available

S-EPMC4402276 | biostudies-literature

Acute Malaria Induces PD1+CTLA4+ Effector T Cells with Cell-Extrinsic Suppressor Function.

Not available

S-EPMC5089727 | biostudies-literature

Nitrate Starvation time course membrane protein phosphoproteomics

Nitrate nutrtition was withdrawn from Arabiodpsis plants to study early responses upon nitrate depletion. Plants were grown under full nutrition (3mM nitrate) for three weeks and then transferred to nutrient solution without nitrate for 15 minutes and 3 hours.

ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress)

2024-05-21 | PXD015390 | Pride

Arabidopsis Nitrate starvation Membrane proteins Phosphorylation

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