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TranscriptomicsRNA-seq analysis of the transcriptome from Sulfur Deprivation Chlamydomonas cells
The Chlamydomonas reinhardtii transcriptome was characterized from nutrient-replete and sulfur-depleted wild-type and snrk2.1 mutant cells; the mutant is null for the regulatory serine-threonine kinase SNRK2.1, which is required for acclimation to sulfur deprivation. The transcriptome analyses invol...
ORGANISM(S): Chlamydomonas reinhardtii 
2010-07-07 | E-GEOD-17970 | biostudies-arrayexpress
TranscriptomicsMonitoring of functional gene responses to biostimulation from a TCE-contaminated site
A functional microarray targeting 24 genes involved in chlorinated solvent biodegradation pathways has been developed and used to monitor the gene expression in a contaminated site (site B) under ERD (enhanced reductive dechlorination) treatment. The microarray format provided by NimbleGen and used ...
ORGANISM(S): groundwater metagenome 
2012-04-02 | E-GEOD-28608 | biostudies-arrayexpress
TranscriptomicsMonitoring of functional gene responses to biostimulation from TCE-contaminated sites using a functional microarray
This SuperSeries is composed of the following subset Series: GSE28606: Monitoring of functional gene responses to ERD (enhanced reductive dechlorination) from four TCE-contaminated sites GSE28608: Monitoring of functional gene responses to biostimulation from a TCE-contaminated site Refer to individ...
ORGANISM(S): groundwater metagenome 
2012-04-02 | E-GEOD-28609 | biostudies-arrayexpress
TranscriptomicsBacillus cereus strain 31673
Comparative Genomic Hybridization. Analysis of genomic content of closely related Bacillus species. Refer to individual records for strain information. Refer to platform and individual sample records for experimental protocols.
ORGANISM(S): Bacillus anthracis str. Ames 
2010-06-05 | E-GEOD-568 | biostudies-arrayexpress
TranscriptomicsThe Repertoire and Dynamics of Evolutionary Adaptations to Controlled Nutrient-Limited Environments in Yeast
The experimental evolution of laboratory populations of microbes provides an opportunity to observe the evolutionary dynamics of adaptation in real time.Until very recently, however, such studies have been limited by our inability to systematically find mutations in evolved organisms.We overcome thi...
ORGANISM(S): Saccharomyces cerevisiae 
2010-05-18 | E-GEOD-13435 | biostudies-arrayexpress
Transcriptomics3CB-induced gene expression of Pseudomonas putida KT2440 in soil
To know whether the microarray technique could be used to detect bacterial gene expression in soil, large quantity of RNA was extracted from soil cultures of Pseudomonas putida KT2440 containing a chloroaromatic degrading plasmid at the presence or absence of the growth substrate, 3-chlorobenzoate (...
ORGANISM(S): Pseudomonas putida KT2440 
2010-04-01 | E-GEOD-19516 | biostudies-arrayexpress
ProteomicsStructure and mechanism of a novel cytomegaloviral DCAF mediating interferon antagonism
Human cytomegalovirus (CMV) is a highly relevant pathogen, and its rodent counterparts serve as common infection models. Global proteome profiling of rat CMV (RCMV)-infected cells uncovered a pronounced loss of the transcription factor STAT2, which is crucial for interferon signalling. Deletion muta...
ORGANISM(S): Cellular Organisms 
2022-12-15 | PXD033366 | JPOST Repository
TranscriptomicsMicroarray analysis of high Arctic soil bacterial response to hydrocarbon pollution and bioremediation: 16S rRNA
High Arctic soils have low nutrient availability, low moisture content and very low temperatures and, as such, they pose a particular problem in terms of hydrocarbon bioremediation. An in-depth knowledge of the microbiology involved in this process is likely to be crucial to understand and optimize ...
ORGANISM(S): Bacteria 
2010-06-19 | E-GEOD-17532 | biostudies-arrayexpress
ProteomicsFeS protein levels in Arabidopsis plants expressing a mutated NEET protein
Iron-sulfur (Fe-S) clusters play an essential role in plants as protein co-factors mediating diverse electron transfer reactions. Because they can react with oxygen to form reactive oxygen species (ROS) and cause cellular damage, the biogenesis of Fe-S clusters is highly regulated. A newly discovere...
ORGANISM(S): Arabidopsis Thaliana 
2021-01-24 | PXD015447 | panorama
Transcriptomics16S rRNA sequencing of cecal microbiota from neonatal mice pre- and post-weaning
Neonatal mice were susceptible to cryptosporidium infection at 1- and 2-weeks of age, but were resistant to infection at 3- and 6-weeks of age. Diet and microbial changes are known to occur during the weaning transition in mice and we hypothesized that these changes in the intestinal luminal environ...
ORGANISM(S): mouse gut metagenome 
2020-11-03 | E-MTAB-9100 | biostudies-arrayexpress
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