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TranscriptomicsTranscription profiling of rat immortalized SCN cells - circadian experiment
To determine whether immortalized cells derived from the rat SCN (SCN 2.2) retain intrinsic rhythm-generating properties characteristic of the SCN, oscillatory properties of the SCN2.2 transcriptome were analyzed and compared to those found in the rat SCN in vivo using rat U34A Affymetrix GeneChips....
ORGANISM(S): Rattus norvegicus 
2008-06-11 | E-GEOD-1654 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of rat immortalized SCN cells: comparison to long-evans rat SCN
To determine whether immortalized cells derived from the rat SCN (SCN 2.2) retain intrinsic rhythm-generating properties characteristic of the SCN, oscillatory properties of the SCN2.2 transcriptome were analyzed and compared to those found in the rat SCN in vivo using rat U34A Affymetrix GeneChips....
ORGANISM(S): Rattus norvegicus 
2008-06-11 | E-GEOD-1673 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of mouse NIH3T3 Fibroblasts circadian expression, comparison with rhythmic gene expression in SCN2.2 Cells and the rat SCN
To screen for specific circadian outputs that may distinguish the pacemaker in the mammalian suprachiasmatic nucleus (SCN) from peripheral-type oscillators in which the canonical clockworks are similarly regulated in a circadian manner, the rhythmic behavior of the transcriptome in forskolin-stimula...
ORGANISM(S): Mus musculus 
2008-06-14 | E-GEOD-5810 | biostudies-arrayexpress
GenomicsActinomadura sp. SCN-SB
Actinomadura sp. SCN-SB Genome sequencing
PRJNA1173323 | ENA
ProteomicsSCN circadian proteomes of miR-132/212 KO and WT mice by super-SILAC-based quantitative mass spectrometry
To identify potential mechanisms underlying the phenotype of miR-132/212 KO mice under short photoperiods, we used quantitative mass spectrometry to analyze the SCN proteomes of miR-132/212 KO and WT mice under a 8:16 LD schedule at 4 time points, spaced 6h apart, across a 24h cycle (n=4 per time po...
ORGANISM(S): Mus musculus (Mouse) 
2017-04-24 | PXD003635 | Pride
Mouse Scn Lc-ms/ms 
TranscriptomicsSCN lightpulse timecourse
The aim of the experiment was to identify genes in the mouse suprachiasmatic nucleus whose expression was altered by exposure to a light pulse of 400 lux at CT16 (subjective night). C57BL/6 male mice were entrained to a 12:12 LD cycle and given a 30 min 400 lux light pulse at CT16. Punches of SCN ti...
ORGANISM(S): Mus musculus 
2013-12-16 | E-MEXP-3933 | biostudies-arrayexpress
GenomicsAchromobacter xylosoxidans strain:SCN-PN1
Achromobacter xylosoxidans strain:SCN-PN1 Genome sequencing
PRJNA1392319 | ENA
TranscriptomicsCircadian regulation of gene expression in the SCN (gene expression)
We performed a circadian RNA expression profile of the mammalian biological clock, the suprachiasmatic nucleus (SCN) in C57/BL6 mice, at 2-hour resolution using microarrays, and at 6-hour resolution using RNA-seq. 24 samples total covering 24 time points, with no replicates. SCN samples from mouse b...
ORGANISM(S): Mus musculus 
2015-12-31 | E-GEOD-70384 | biostudies-arrayexpress
GenomicsGuyparkeria sp. SCN-R1
Guyparkeria sp. SCN-R1 Genome sequencing and assembly
PRJNA492228 | ENA
GenomicsBurkholderia sp. SCN-KJ
Burkholderia sp. SCN-KJ Genome sequencing and assembly
PRJNA864118 | ENA
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