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TranscriptomicsRNA-Seq Profiling of a Defective Seed Coat Mutation in Glycine max Reveals Differential Expression of Proline Rich and Other Cell Wall Protein Transcripts
The plant cell wall performs a number of essential functions including providing shape to many different cell types and serving as a defense against potential pathogens. The net pattern mutation creates breaks in the seed coat of soybean (Glycine max) because of ruptured cell walls. Using RNA-Seq, w...
ORGANISM(S): Glycine max 
2014-05-16 | E-GEOD-54903 | biostudies-arrayexpress
TranscriptomicsGene expression during seed coat development in Arabidopsis
Transcriptional profiling during Arabidopsis seed coat development at 3 key developmental timepoints by using 2 mutant lines and their wild types. The data provides a globe view of seed coat development in arabidopsis can be used for identification of new gene candidates for seed coat development. 3...
ORGANISM(S): Arabidopsis thaliana 
2011-03-10 | E-GEOD-27857 | biostudies-arrayexpress
MetabolomicsThe diversity of quinoa morphological traits and seed metabolic composition

Quinoa (Chenopodium quinoa Willd.) is an herbaceous annual crop of the amaranth family (Amaranthaceae). It is increasingly cultivated for its nutritious grains, which are rich in protein and essential amino acids, lipids, and minerals. Quinoa exhibits a high tolerance towards various abi...

2022-03-10 | MTBLS2382 | MetaboLights
TranscriptomicsEndogenous, tissue-specific short-interfering RNAs silence the chalcone synthase gene family in Glycine max seed coats
We present results from deep sequencing of small RNA populations from several genotypes of soybean and demonstrate that the CHS siRNAs accumulated only in the seed coats of the yellow varieties having either the dominant I or i-i alleles and not in the pigmented seed coats with homozygous recessive ...
ORGANISM(S): Glycine max 
2010-05-13 | E-GEOD-21825 | biostudies-arrayexpress
MetabolomicsUltrasound Priming Enhances Seed Vigor and Multiple Stresses Tolerance in Aged Maize Seeds

Seed aging leads to reduced germination rates and vigor, particularly under stress conditions. We subjected aged maize seeds to 40 seconds of ultrasonic treatment, which enhanced their vigor and tolerance to combined stress. The ultrasonic treatment increased more cracks and holes in the seed coa...

2026-03-25 | MTBLS14138 | MetaboLights
TranscriptomicsTranscription profiling of seed coat of Medicago truncatula 10-36 days after pollination
Genes specifically or induced in seed coat of Medicago truncatula 10-36 days after pollination were identified by comparing with genes expressed in other organs.
ORGANISM(S): Medicago truncatula 
2008-09-18 | E-MEXP-1116 | biostudies-arrayexpress
TranscriptomicsExpression data from the seed coats of black (iRT) and brown (irT) soybean variant for alleles of the R locus
The seed coat of black (iRT) soybean with the dominant R allele begins to accumulate cyanic pigments at the transition stage of seed development (300 – 400 mg fresh seed weight), whereas the brown (irT) nearly-isogenic seed coat with the recessive r allele lacks cyanic pigments at all stages of seed...
ORGANISM(S): Glycine max 
2011-08-22 | E-GEOD-26208 | biostudies-arrayexpress
GenomicsMethylation Changes in Soybean Cotyledon Stage Seed Parts
Seeds are comprised of three major parts of distinct parental origin: the seed coat, embryo, and endosperm. The maternally-derived seed coat is important for nurturing and protecting the seeds during development. By contrast, the embryo and the endosperm are derived from a double fertilization event...
ORGANISM(S): Glycine max 
2014-05-17 | E-GEOD-57762 | biostudies-arrayexpress
TranscriptomicsSEEDSTICK Is a Master Regulator of Development and Metabolism in Arabidopsis Seed Coat
Purpose: The goals of this study are to compare NGS-derived transcriptome profiling (RNA-seq) from the SEEDSTICK mutant in Arabidopsis with a wild type, to unveil the role of this transcription factor in seed development and decipher the impact of this factor in PAs metabolism Methods: Total RNA wa...
ORGANISM(S): Arabidopsis thaliana 
2014-12-17 | E-GEOD-59637 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Medicago truncatula seed coats and endosperm compared to embryos
Comparison of gene expression in Medicago truncatula seed coats and endosperm, both against a reference sample from embryos.
ORGANISM(S): Medicago truncatula 
2007-10-08 | E-MEXP-904 | biostudies-arrayexpress
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