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Unknown (833)
Transcriptomics (59)
Proteomics (43)
Genomics (7)
Metabolomics (2)

Organisms

Schizosaccharomyces pombe (32)
Oryza sativa Indica Group (32)
Sinorhizobium meliloti BL225C (32)
Sus scrofa domesticus (32)
Saccharomyces cerevisiae (32)
Staphylococcus aureus (32)
Rattus norvegicus (32)
Escherichia coli (32)
Entamoeba histolytica (32)
Physcomitrium patens (32)
Methylohalobius crimeensis 10Ki (32)
Homo sapiens (32)
Shigella flexneri (32)
Homo sapiens (24)
Mus musculus (23)
Oryza sativa (3)
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 (2)
Xanthomonas oryzae pv. oryzae PXO99A (2)
Escherichia coli (2)
Arabidopsis thaliana (2)
Populus alba x Populus glandulosa (1)
Burkholderia glumae (1)
Ogataea angusta (1)
Salmonella enterica subsp. enterica serovar Typhi (1)
Staphylococcus aureus (1)
Escherichia coli K-12 (1)
Gallus gallus (1)
Corynebacterium glutamicum ATCC 13032 (1)
Saccharomyces cerevisiae (1)
Rattus norvegicus (1)

Repository

biostudies-arrayexpress (66)
pride (32)
MassIVE (7)
jPOST (3)
MetaboLights (2)
PeptideAtlas (1)

Tissue

Cell culture (6)
Brain (4)
Epithelial cell (4)
Permanent cell line cell (3)
HEK-293T cell (2)
Stem cell (2)
Forebrain neuroblast (1)
Prostate adenocarcinoma cell (1)
Kidney cell (1)
Diploid cell (1)
Early embryonic cell (1)
Brown adipose tissue (1)
Monocyte (1)
Fibroblast (1)
Microglial cell (1)
Blood cell (1)
Skin (1)
T cell (1)
Colon (1)
Lung (1)
Retina (1)
Blood plasma (1)
Kidney (1)
Liver (1)

Disease

Disease free (2)
Acute leukemia (2)
Toxic encephalopathy (1)
Myopia (1)
Fragile X syndrome (1)
Prostate cancer (1)
Prostate adenocarcinoma (1)
Alzheimer's disease (1)
Cervix carcinoma (1)
Breast cancer (1)
Chronic kidney disease (1)
Colon cancer (1)

Technology Type

Mass Spectrometry (32)
Shotgun proteomics (13)
Data-dependent acquisition (10)
Bottom-up proteomics (7)
Affinity purification coupled with mass spectrometry proteomics (3)
SWATH MS (3)
Mass spectrometry (2)
HDMSE (1)
Top-down proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Linux server, HPC cluster (3)
Thermal cycler (Bio-Rad C1000), Agilent 2100 Bioanalyzer, Qubit 4 Fluorometer (3)
Benchtop centrifuge, vortex, NanoDrop or plate reader (for RiboGreen assay), TapeStation (Agilent) (3)
Liquid nitrogen freezer, surgical instruments (3)
Illumina NovaSeq 6000 (3)
TripleTOF 5600 (3)
Not applicable in this study (2)
DNA Microarray Scanner BA [Agilent Technologies] (1)
Thermo fusion lumos (1)
TripleTOF 6600 (1)
Q Exactive Plus (1)
Q Exactive (1)
Agilent 7890A GC-LECO Pegasus HT TOFMS (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)
LTQ Orbitrap Velos (1)

Publication Date

2025 (12)
2014 (11)
2012 (11)
2013 (10)
2011 (10)
2026 (8)
2015 (7)
2010 (6)
2022 (6)
2016 (4)
2008 (4)
2021 (4)
2018 (4)
2020 (4)
2007 (2)
2024 (2)
2023 (2)
2005 (1)
2017 (1)

UNIPROT ID/AC

Q9Z2G0 (1)
Q9Z1P5 (1)
Q9Z183 (1)
Q9Z175 (1)
Q9Z0X0 (1)
Q9Z0P7 (1)
Q9Z0L0 (1)
Q9WVL1 (1)
Q9WVC3 (1)
Q9WV95 (1)
Q9WUI0 (1)
Q9WTP2 (1)
Q9R224 (1)
Q9QZS0 (1)
Q9QZM4 (1)
Q9QZA0 (1)
Q9QYK5 (1)
Q9QXX8 (1)
Q9QXW0 (1)
Q9QXP7 (1)
Q9QWZ1 (1)
Q9JM58 (1)
Q9JLJ1 (1)
Q9JKN1 (1)
Q9JK92 (1)
Q9JJA9 (1)
Q9JHT5 (1)
Q9JHH9 (1)
Q9ET78 (1)
Q9ESN5 (1)

ENSEMBL ID

ENSMUSP00000140201 (1)
ENSMUSP00000069525 (1)
ENSMUSP00000141637 (1)
ENSMUSG00000027651 (1)
ENSMUSG00000021039 (1)
ENSMUSP00000141097 (1)
ENSMUSG00000098557 (1)

CHEBI ID

CHEBI:10213 (1)
CHEBI:133981 (1)
CHEBI:79318 (1)
CHEBI:75627 (1)
CHEBI:27506 (1)
CHEBI:28243 (1)
CHEBI:10352 (1)
CHEBI:47771 (1)
CHEBI:78410 (1)
CHEBI:31000 (1)
CHEBI:79347 (1)
CHEBI:28260 (1)
CHEBI:18222 (1)
CHEBI:37684 (1)
CHEBI:28757 (1)
CHEBI:78320 (1)
CHEBI:27266 (1)
CHEBI:24898 (1)
CHEBI:26271 (1)
CHEBI:28300 (1)
CHEBI:16449 (1)
CHEBI:22653 (1)
CHEBI:26986 (1)
CHEBI:22660 (1)
CHEBI:26984 (1)
CHEBI:28623 (1)
CHEBI:28044 (1)
CHEBI:18237 (1)
CHEBI:29016 (1)
CHEBI:16811 (1)

Metabolite Name

N-(phenylacetyl) aspartic acid (1)
4-Aminobutyric acid (1)
P-Hydroxybenzoic acid (1)
Lactic acid (1)
Mannose (1)
Galactose (1)
Shikimic acid (1)
Leucine (1)
Xylose (1)
Fructose (1)
Glycolic acid (1)
Sinapinic acid (1)
P-Coumaric acid (1)
Serine (1)
Valine (1)
Arginine (1)
Methionine (1)
Alanine (1)
Threonic acid (1)
Pyruvic acid (1)
Nicotinic acid (1)
Beta-Alanine (1)
Malic acid (1)
Mannitol (1)
Glycine (1)
Ethanolamine (1)
Glycerol (1)
Pyroglutamic acid (1)
Tryptophan (1)
Glyceric acid (1)

Study type

Transcription profiling by array (38)
RNA-seq of coding RNA (11)
ChIP-seq (6)
Unknown experiment type (2)
Transcription profiling by tiling array (2)
Comparative genomic hybridization by array (2)
Methylation profiling by array (2)
ChIP-chip by tiling array (1)
Other (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2022 (109)
2021 (105)
2023 (96)
2024 (84)
2025 (80)
2020 (71)
2019 (49)
2018 (45)
2015 (41)
2016 (33)
2014 (27)
2013 (26)
2011 (26)
2012 (25)
2017 (23)
2010 (15)
2008 (11)
2009 (10)
2026 (9)
2007 (7)
2004 (4)
2005 (1)
2003 (1)
2001 (1)

Lab affiliation

Assistant professor, School of Biological Sciences, Seoul National University (3)
Proteomics Facility, Netherlands Cancer Institute, Amsterdam, Netherlands. & Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research, Utrecht Institute for Pharmaceutical Sciences, Utrecht University and Netherlands Proteomics Centre, Utrecht, The Netherlands. (1)
Department of Biomedical Science and Technology, Kyung Hee Medical Science Research Institute, Kyung Hee University, Seoul, South Korea (1)
Department of Cancer Biology, Dana-Farber Cancer Institute Department of Cell Biology, Harvard Medical School (1)
Department of Chemistry and Center for Wave Energy Materials, Ulsan National Institute of Science and Technology (UNIST), Ulsan 44919, Republic of Korea (1)
Centre for Discovery Brain Sciences, University of Edinburgh, UK; Simons Initiative for the Developing Brain, University of Edinburgh, UK (1)
Department of Physiology and Department of Biomedical Sciences, Ajou University School of Medicine, Suwon, Republic of Korea Immune-network pioneer research center, Ajou University School of Medicine, Suwon, Republic of Korea (1)
Mie University Graduate School of Medicine (1)
Department of Biological Sciences, Ulsan National Institute of Science and Technology,50 UNIST-gil, Ulju-gun, Ulsan 44919, Republic of Korea (1)
Department of Chemistry, Seoul National University, Seoul 08826, Korea (1)
Professor, Institute of Biomaterials & Biomedical Engineering, University of Toronto Canada Research Chair in Stem Cell Bioengineering Terrence Donnelly Centre for Cellular and Biomolecular Research Chief Scientific Officer, Centre for Commercialization of Regenerative Medicine FRSC (1)
Department of Chemistry and Biotechnology, School of Engineering, The University of Tokyo, Tokyo 113-8656, Japan Department of Bioengineering, School of Engineering, The University of Tokyo, Tokyo 113-8656, Japan (1)
Center for RNA Research, Institute for Basic Science, Seoul 08826, Korea School of Biological Sciences, Seoul National University, Seoul 08826, Korea (1)
Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School; Boston, MA, United States (1)
University of Bergen, Department of Biomedicine (1)
Department of Microbiology, Asan Medical Institute of Convergence Science and Technology, Asan Medical Center, University of Ulsan College of Medicine, Seoul, Republic of Korea (1)
School of Biological Sciences, Seoul National University, Seoul, 08826, Republic of Korea Center for RNA Research, Institute of Basic Science, Seoul National University, Seoul, 08826, Republic of Korea (1)
Department of Neurology, Second Affiliated Hospital, School of Medicine, Zhejiang University, Hangzhou 310009, China (1)
Center for Theragnosis, Korea Institute of Science and Technology, Republic of Korea (1)
Northeastern University (1)
Department of Cellular and Molecular Pharmacology, University of California, San Francisco, CA (1)
Department of Biological Sciences, College of Information and Bioengineering, Ulsan National Institute of Science and Technology, Ulsan 44919, Republic of Korea (1)
Yonsei university (1)
Group for Biometrology, Korea Research Institute of Standards and Science (KRISS), 267 Gajeong-ro, Yuseong-gu, Daejeon 34113, Republic of Korea (1)
Department of Ophthalmology, Yongin Severance Hospital, Yonsei University College of Medicine, Yongin-si, Gyeonggi-do, South Korea, 16995 (1)
Department of Microbial Proteomics, Institute of Microbiology, University of Greifswald, Greifswald, Germany (1)
Dana Farber Cancer Institute (1)
Department of Molecular and Cellular Neurobiology, Center for Neurogenomics and Cognitive Research, Amsterdam Neuroscience, Vrije Universiteit Amsterdam, The Netherlands (1)
Proteomics core facility, Biomedical Research Institute, Seoul National University Hospital (1)
Proteomics core facility, Biomedicial Research Institute, Seoul National University Hospital (1)

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An Integrated Biochemical, Proteomics, and Metabolomics Approach for Supporting Medicinal Value of Panax ginseng Fruits (GC-MS assay)

Panax ginseng roots are well known for their medicinal properties and have been used in Korean and Chinese traditional medicines for 1000s of years. However, the medicinal value of P. ginseng fruits remain poorly characterized. Using gas chromatography-time of flight mass spectrometry (GC-TOF MS), 6...

2016-11-18 | MTBLS350 | MetaboLights

Separation of the Bioactive Exosomes from Extracellular Vesicles Derived from Murine CTLs

Recently, instead of ultracentrifugation, development of new preparation protocol is demanded for research of reliable bioactivity and drug discovery of extracellular vesicles (EVs). In this study, we propose a novel method for large scale preparation of high-performance extracellular vesicles focus...

ORGANISM(S): Mus musculus (Mouse)

2022-04-04 | PXD017899 | Pride

Data set of a representative online survey on search engines with a focus on search engine optimization (SEO): a cross-sectional study.

Not available

S-EPMC9551386 | biostudies-literature

Partially Manganese-Substituted Li-Rich Antiperovskite (Li<sub>2</sub>Fe)SeO Cathode for Li-Ion Batteries.

Not available

S-EPMC12444673 | biostudies-literature

Examination of hepatic SREBP-2 binding using ChIP-Seq

Sterol regulatory element binding proteins (SREBPs) are key transcriptional regulators of lipid metabolism. To define functional differences between the three mammalian SREBPs we are using genome-wide ChIP-seq with isoform-specific antibodies and chromatin from select tissues of mice challenged with...

ORGANISM(S): Mus musculus

2011-03-22 | E-GEOD-28082 | biostudies-arrayexpress

Association between ursodeoxycholic acid use and COVID-19 in individuals with chronic liver disease: a nationwide case-control study in South Korea.

Not available

S-EPMC11351260 | biostudies-literature

Interfacial Engineering of SeO Ligands on Tellurium Featuring Synergistic Functionalities of Bond Activation and Chemical States Buffering toward Electrocatalytic Conversion of Nitrogen to Ammonia.

Not available

S-EPMC6794632 | biostudies-literature

Discovery of N-glycan Biomarkers for the Canine Osteoarthritis.

Not available

S-EPMC7555374 | biostudies-literature

Genome-wide Localization of SREBP-2 in Hepatic Chromatin Predicts a Novel Role in Autophagy

This SuperSeries is composed of the following subset Series: GSE28082: Examination of hepatic SREBP-2 binding using ChIP-Seq GSE28083: Expression data from CH/LE Mice Refer to individual Series

ORGANISM(S): Mus musculus

2011-03-23 | E-GEOD-28084 | biostudies-arrayexpress

RNA-Seq analysis of quorum sensing-dependent genes in Burkholderia glumae BGR1

Burkholderia glumae causes rice grain rot and sheath rot by producing toxoflavin, whose expression is regulated by quorum sensing (QS). The QS systems of the bacterium rely on N-octanoyl homoserine lactone, synthesized by TofI and its cognate receptor TofR, to activate toxoflavin biosynthesis genes ...

ORGANISM(S): Burkholderia glumae

2012-03-14 | E-GEOD-36485 | biostudies-arrayexpress

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944 Results

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