Shah D D - OmicsDI

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Unknown (6057)
Transcriptomics (153)
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Proteomics (91)
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Organisms

Homo sapiens (158)
Bombyx mori (81)
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Human immunodeficiency virus 1 (81)
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Sinorhizobium meliloti BL225C (81)
Sus scrofa domesticus (81)
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Paxillus involutus ATCC 200175 (2)
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Mus (1)

Organisms

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Homo sapiens (1)

Repository

biostudies-arrayexpress (202)
pride (81)
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Tissue

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Mass Spectrometry (81)
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Instrument Platform

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QToF (1)

Publication Date

2010 (45)
2013 (30)
2011 (30)
2022 (23)
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2003 (1)

CHEBI ID

CHEBI:18183 (6)
CHEBI:15756 (6)
CHEBI:16113 (5)
CHEBI:30746 (5)
CHEBI:16196 (5)
CHEBI:27266 (5)
CHEBI:16737 (5)
CHEBI:17895 (5)
CHEBI:30769 (5)
CHEBI:3291 (4)
CHEBI:71464 (4)
CHEBI:28527 (4)
CHEBI:64549 (4)
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CHEBI:75342 (4)
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CHEBI:15843 (4)
CHEBI:48131 (4)
CHEBI:50183 (1)

Metabolite Name

Valine (4)
Rutin (4)
Ornithine (4)
Taurine (4)
Citric acid (4)
Paracetamol (3)
Taurochenodeoxycholic acid (3)
Trolox (3)
Butylparaben (3)
Kynurenic acid (3)
Benzoic acid (3)
LPE 18:2 (3)
Cholesterol (3)
L-Palmitoylcarnitine (3)
Glycocholic acid (3)
Docosahexaenoic acid (3)
Arachidonic acid (3)
Serine (3)
Palmitic acid (3)
Oleic acid (3)
Isoleucine (3)
Dodecanedioic acid (3)
Azelaic acid (3)
Uric acid (3)
Uridine (3)
Creatinine (3)
L-Tyrosine (3)
2-Hydroxyisocaproic Acid (2)
N-Isovalerylglycine (2)
(-)-Rhododendrin (2)

First Public Date

2024 (2)
2020 (1)
2014 (1)

Modelling Approach

Computational model (4)

Lab affiliation

Bioplatforms Australia (7)
Professor Dept. Cell Biology 615 Michael Street Whitehead 446 Atlanta, GA, 30322 Emory University (4)
King's College London (4)
Departments of Surgery and Biomedical Sciences Cedars-Sinai Medical Center Los Angeles, CA 90048 (3)
Bradley Distinguished Professor Chair of Cancer Biology & Research Professor of Cell Biology Centre for Cancer Biology University of South Australia (2)
Research Unit Molecular Epigenetics German Research Center for Environmental Health (GmbH) Helmholtz Zentrum München Marchioninistraße 25 81377 Munich Tel. +49 89 3187-1512 Fax +49 89 3187-1200 (1)
Associate Professor Molecular and Integrative physiology University of Michigan Ann Arbor MI 48109 USA (1)
King's BHF Centre of Research Excellence King's College London (London, UK) Contact 1: Prof Manuel Mayr (manuel.mayr@kcl.ac.uk) Contact 2: Dr Javier Barallobre-Barreiro (javier.barallobre-barreiro@kcl.ac.uk) (1)
Assistant Professor Department of Neurology (1)
GlaxoSmithKline (GSK) (1)
IPSIM, INRAE, Montpellier, France (1)
Institute for Cell and Molecular Biosciences, Newcastle University, Newcastle upon Tyne, UK. (1)
Prof. Sanjeeva Srivastava, PhD, FRSB, FRSC Professor and Group Head Department of Biosciences & Bioengineering Indian Institute of Technology Bombay Mumbai – 400076, India Phone: +91-22-2576-7779 Email: sanjeeva@iitb.ac.in (1)
Department of Biochemistry, Monash University, Clayton,3168, Australia (1)
Harvard Institutes of Medicine 2nd floor, Room 221 4 Blackfan Circle Boston, MA 02115 (1)
Professor of Chemical Enginnering Department Indian Institute of Technology Delhi (1)
Bioplatforms Australia (project manager) (1)
Leiden University Medical Center (1)
The University of Queensland Diamantina Institute, University of Queensland, Translational Research Institute, Brisbane QLD 4102, Australia and QIMR Berghofer Medical Research Institute, Brisbane QLD 4006, Australia (1)
School of Biosciences University of Sheffield United Kingdom (1)
ACI in Gastroenterology (1)
Biosciences Division (1)
Biomedical Center Munich Molecular Biology Großhaderner Strasse 9 82152 Planegg-Martinsried (1)
Department of Pathology, Johns Hopkins University School of Medicine (1)
Department for Cell Biology Biomedical Center (BMC) Medical Faculty, LMU Großhaderner Straße 9, 82152 Planegg-Martinsried, Germany (1)
Proteomics Head, British Columbia Cancer Agency, Vancouver, Canada (1)
Head, Cancer Data Science (ProCan) Children's Medical Research Institute University of Sydney Westmead, NSW, Australia (1)
Department of Medicine, Columbia University (1)
Regeneron Proteomics and Biomarkers (1)
Victor Faundez MD, PhD Professor Dept. Cell Biology 615 Michael Street Whitehead 446 Atlanta, GA, 30322 Emory University (1)

IsPrivate

False (4)

Submitter Keywords

Ersilia (4)
Machine Learning Model (4)

Classification

bacteria (1)

Modification

Not available (1)

Study type

Transcription profiling by array (93)
ChIP-seq (48)
RNA-seq of coding RNA (28)
Unknown experiment type (7)
Comparative genomic hybridization by array (6)
ChIP-chip by tiling array (5)
Cell line - High-throughput sequencing (3)
MicroRNA profiling by high-throughput sequencing (2)
Genotyping by array (2)
Methylation profiling by array (2)
High-throughput sequencing (1)
Transcription profiling by RT-PCR (1)
Other (1)
MicroRNA profiling by array (1)
Proteomic profiling by array (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2022 (765)
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RNA-Seq of monoclonal cell lines after CRISPR/Cas9-mediated editing of box C/D snoRNA genes (SNORDs)

In this study monoclonal cell lines carrying mutations in snoRNA genes (SNORD74, SNORD75, SNORD77, SNORD80) were obtained. Next, whole transcriptome analysis of obtained cell lines was performed on an Illumina NextSeq 500 platform. RNA-seq libraries was constructed on PolyA mRNA-enriched fraction. T...

ORGANISM(S): Homo sapiens

2019-10-14 | E-MTAB-8269 | biostudies-arrayexpress

Vitamin D, vitamin D-binding protein, free vitamin D and COVID-19 mortality in hospitalized patients.

Not available

S-EPMC8903333 | biostudies-literature

Global transcriptional profiling of tyramine and D-glucuronic acid catabolism in Salmonella

PRJNA647759 | ENA

Vitamin D and VDR gene polymorphism (FokI) in epithelial ovarian cancer in Indian population.

Not available

S-EPMC3668239 | biostudies-literature

Interplay between Maternal and Neonatal Vitamin D Deficiency and Vitamin-D-Related Gene Polymorphism with Neonatal Birth Anthropometry.

Not available

S-EPMC8839863 | biostudies-literature

Global Analysis of Post-transcriptional Gene Expression in Arsenite-treated Human BJ Fibroblasts

Arsenic is a potent environmental toxin and a cause of numerous health problems. Most studies have assumed that arsenic-induced changes in mRNA levels result from effects on gene transcription. The influence of arsenic on post-transcriptional regulation, another important locus of gene expression ...

ORGANISM(S): Homo sapiens

2015-04-15 | E-GEOD-57051 | biostudies-arrayexpress

Rdh54/Tid1 inhibits Rad51-Rad54-mediated D-loop formation and limits D-loop length.

Not available

S-EPMC7695457 | biostudies-literature

Ramanlal Bhikhabhai Shah

Not available

S-EPMC1388179 | biostudies-literature

Influence of vitamin D binding protein polymorphism, demographics and lifestyle factors on vitamin D status of healthy Malaysian pregnant women.

Not available

S-EPMC7684735 | biostudies-literature

D-series Resolvins activate Phospholipase D in phagocytes during inflammation and resolution.