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ProteomicsIn-depth proteomic analyses of Haliotis laevigata (greenlip abalone) nacre and prismatic organic shell matrix
Background: The shells of various Haliotis species have served as models of invertebrate biomineralization and physical shell properties for more than 20 years. A focus of this research has been the nacreous inner layer of the shell with its conspicuous arrangement of aragonite platelets, resembling...
ORGANISM(S): Haliotis laevigata 
2018-06-18 | PXD009567 | Pride
Nacre Proteome Biomineralization Mantle transcriptome Shell organic matrix Prismatic layer 
TranscriptomicsThe Nucleus Accumbens Shell and Central Nucleus of the Amygdala of Alcohol-Preferring Rats Following Binge-Drinking
The objective of this study was to determine changes in gene expression within the extended amygdala following binge-like drinking by alcohol-preferring (P) rats. Adult male P rats were given 1-hr access to 15 and 30% ethanol (EtOH) three times daily for 8 weeks. Rats (n = 10/time point for EtOH and...
ORGANISM(S): Rattus norvegicus 
2009-12-30 | E-GEOD-15407 | biostudies-arrayexpress
ProteomicsProteomic analysis of the shell organic matrix of Spondylus Gaederopus
This work reports a comprehensive and integrated microstructural, biochemical and proteomics study on the shell matrix of Spondylus gaederopus, the Mediterranean thorny oyster. We investigate the skeletal matrix proteins which are involved in biomineralization and compare the identified Spondylus se...
ORGANISM(S): Spondylus gaederopus 
2020-03-31 | PXD016760 | Pride
Biomineralization Proteomics Shell proteins Mollusc shells 
ProteomicsProteomic analysis of larval and adult shell matrix proteins in Crassostrea nippona by LC-MS/MS
This project contains proteomic profiles of shell matrix proteins (SMPs) from the Iwagaki oyster Crassostrea nippona, covering both life stage-specific shells (D-stage larval and adult shell) and shell microstructure-specific layers (prismatic, foliated, and chalky layers of the adult shell). These ...
ORGANISM(S): Crassostrea nippona 
2026-02-09 | PXD064366 | Pride
Adult Oyster Shell Larva 
TranscriptomicsGene expression data from brain nucleus accumbens shell (Acb-sh) following binge-like alcohol drinking by adolescent alcohol-preferring rats
The objective of this study was to determine changes in gene expression within the extended amygdala following binge-like alcohol drinking by adolescent alcohol-preferring (P) rats. Starting at 28 days of age, P rats were given concurrent access to 15 and 30 % ethanol for 3 one-h sessions for 5 cons...
ORGANISM(S): Rattus norvegicus 
2013-07-20 | E-GEOD-49041 | biostudies-arrayexpress
TranscriptomicsEffects of selection for ethanol preference on gene expression (RNA-Seq) in the nucleus accumbens shell of HS-CC mice
Nucleus accumbens shell gene expression was assessed by RNA-Seq to determine effects of bidirectional selection for ethanol preference from a highly genetically diverse founder population. We analyzed the data with both standard methodologies to detect differential expression, and coexpression netw...
ORGANISM(S): Mus musculus 
2015-07-01 | E-GEOD-65950 | biostudies-arrayexpress
Proteomicsshell matrix protein of estuarine oyster (Crassostrea ariakensis) and Pacific oyster (Crassostrea gigas)
Studying the adaptive divergence of shellfish inhabiting different environments is crucial to predict the resilience of marine organisms to rapid climate change. Although the shell serves as the primary physical barrier against environmental change, the evolutionary adaptation of biomineralization i...
ORGANISM(S): Crassostrea gigas (Pacific oyster) (Crassostrea angulata) Crassostrea ariakensis 
2026-03-29 | PXD053708 | Pride
Shell matrix proteins Oysters 
ProteomicsChiton shell proteome sheds light on stem-group mollusca with biomineralization toolkits
The appearance of hard mineralized exoskeletons is a critical leap for animal evolution and partially lead to the explosion of diverse animals during the Cambrian, for example, molluscs. A majority of molluscs have mineralized shells to protect themselves. Despite numerous studies that have studied ...
ORGANISM(S): Chiton stokesii 
2023-01-03 | PXD033490 | Pride
Mollusca  evolution  biomineralization  shell matrix proteins  proteomics 
TranscriptomicsCrab shell attachment
Strain N16961 was incubated with crab shell in artificial seawater media for 24 hours. cDNA from 1 ug RNA was labeled with Cy3 (planktonic bacteria) and Cy5 (crab attached bacteria). A growth condition experiment design type is where some part of the growth condition is changed for the purposes of t...
ORGANISM(S): Vibrio cholerae 
2005-08-11 | E-GEOD-3102 | biostudies-arrayexpress
ProteomicsShell protein degradation by TMT- LC-MS/MS
This study investigates the degradation of mineral-associated proteins from Spondylus gaederopus mollusc shell. We analysed intracrystalline proteins extracted from powdered shell samples that were artificially aged by heating at 110 °C for different time durations (0, 1, 2, 4, 8, 16, 24, 48, 96, 24...
ORGANISM(S): Spondylus gaederopus 
2021-11-25 | PXD025068 | Pride
Shells Protein degradation Quantitative proteomics Intracrystalline proteins 
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