Shen Chen C - OmicsDI

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Unknown (5963)
Proteomics (142)
Transcriptomics (77)
Metabolomics (57)
Genomics (14)
Multiomics (3)
Models (1)

Organisms

Homo sapiens (81)
Allexis (80)
Arabidopsis thaliana (80)
Callinectes sapidus (80)
Danio rerio (80)
Drosophila (80)
Mus musculus (26)
Arabidopsis thaliana (8)
Oryza sativa (5)
Rattus norvegicus (3)
Zea mays (2)
Tardigrada (2)
Sclerotinia sclerotiorum (1)
Capra hircus (1)
Capsicum annuum (1)
Lilium longiflorum (1)
Macaca mulatta (1)
Drosophila simulans (1)
Panonychus citri (1)
Neisseria meningitidis (1)
Apis mellifera (1)
Sus scrofa (1)
Danio rerio (1)
Drosophila melanogaster (1)
Escherichia coli (1)
Human parechovirus strain T82-0169 (1)
Mus sp. (1)
Rattus rattus (1)
Severe acute respiratory syndrome coronavirus 2 (1)
Staphylococcus aureus (1)

Organisms

Mus musculus (2)
Homo sapiens (1)

Repository

biostudies-arrayexpress (81)
pride (80)
iProX (55)
MetaboLights (55)
EGA (5)
ENA (4)
MassIVE (3)
PeptideAtlas (3)
GNPS (2)
Cell Collective (1)
geo (1)
PAXDB (1)

Tissue

Cell culture (16)
Epithelial cell (5)
Testis (5)
Sperm (4)
Others (3)
Blood serum (3)
Leaf (3)
Liver (3)
Lung (3)
Oocyte (3)
Plant cell (3)
Adrenal adenoma cell (2)
Brain (2)
Cell line cell (2)
Cell suspension culture (2)
Early embryonic cell (2)
Embryo (2)
Fungal cell (2)
Heart (2)
Kidney (2)
Ovary (2)
Permanent cell line cell (2)
Root (2)
White adipocyte (2)
Blood (1)
Blood cell (1)
Breast (1)
Breast cancer cell line (1)
Brown adipocyte (1)
Dura mater (1)

Disease

Disease free (6)
Breast cancer (3)
Colon cancer (2)
Alopecia (1)
Amyloidosis (1)
Cardiovascular system disease (1)
Fungal infectious disease (1)
Influenza (1)
Lipid metabolism disorder (1)
Malaria (1)
Malignant neoplasm of ovary (1)
Osteoporosis (1)
Prostate cancer (1)
Stomach cancer (1)

Technology Type

Mass Spectrometry (80)
Shotgun proteomics (52)
Mass spectrometry (45)
Bottom-up proteomics (11)
Data-dependent acquisition (9)
Mass spectrometry assay (8)
Top-down proteomics (4)
Affinity purification coupled with mass spectrometry proteomics (3)
Data-independent acquisition (3)
NMR spectroscopy (2)
Gel-based experiment (2)
SWATH MS (2)
SRM/MRM (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (26)
Liquid Chromatography MS - negative - reverse phase (18)
Liquid Chromatography MS - positive - hilic (9)
Liquid Chromatography MS - negative - hilic (8)
Illumina NovaSeq 6000 (3)
Q Exactive HF (3)
Liquid Chromatography MS - alternating - reverse-phase (3)
TripleTOF 6600 (2)
Gas Chromatography MS - positive (2)
6540 Q-TOF LC/MS (Agilent) (2)
Nuclear Magnetic Resonance (NMR) - (2)
LTQ Orbitrap Elite (2)
Illumina HiSeq 2000 platform (1)
Illumina Genome Analyzer IIx (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 4000 (1)
Liquid Chromatography MS -neg - hilic (1)
Liquid Chromatography MS – pos - hilic (1)
Liquid Chromatography MS - alternating – hilic (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Nuclear Magnetic Resonance (NMR) (1)
Liquid Chromatography MS - - reverse phase (1)
Xevo G2 QTOF (Waters) (1)
Liquid Chromatography MS - (1)
MS Imaging - (1)
Xevo QTof MS (Waters) (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - alternating - reverse phase (1)

Publication Date

2023 (36)
2022 (30)
2025 (22)
2016 (20)
2012 (18)
2021 (18)
2024 (17)
2014 (15)
2020 (15)
2026 (14)
2013 (12)
2019 (11)
2018 (10)
2015 (7)
2011 (6)
2010 (5)
2017 (2)
2008 (1)
2007 (1)
2006 (1)

UNIPROT ID/AC

14331_SOLTU (1)
14332_SOLTU (1)
14335_SOLTU (1)
4113.PGSC0003DMT400001418 (1)
4113.PGSC0003DMT400002078 (1)
4113.PGSC0003DMT400003947 (1)
4113.PGSC0003DMT400005135 (1)
4113.PGSC0003DMT400005136 (1)
4113.PGSC0003DMT400005427 (1)
4113.PGSC0003DMT400009647 (1)
4113.PGSC0003DMT400009751 (1)
4113.PGSC0003DMT400013958 (1)
4113.PGSC0003DMT400015957 (1)
4113.PGSC0003DMT400016201 (1)
4113.PGSC0003DMT400022438 (1)
4113.PGSC0003DMT400027147 (1)
4113.PGSC0003DMT400027379 (1)
4113.PGSC0003DMT400029003 (1)
4113.PGSC0003DMT400031900 (1)
4113.PGSC0003DMT400034164 (1)
4113.PGSC0003DMT400034190 (1)
4113.PGSC0003DMT400035006 (1)
4113.PGSC0003DMT400035007 (1)
4113.PGSC0003DMT400038109 (1)
4113.PGSC0003DMT400040121 (1)
4113.PGSC0003DMT400040171 (1)
4113.PGSC0003DMT400040182 (1)
4113.PGSC0003DMT400041662 (1)
4113.PGSC0003DMT400043254 (1)
4113.PGSC0003DMT400045338 (1)

ENSEMBL ID

ENSG00000147251 (3)
ENSG00000170477 (3)
ENSG00000247315 (3)

CHEBI ID

CHEBI:17895 (17)
CHEBI:30769 (17)
CHEBI:16704 (16)
CHEBI:17295 (16)
CHEBI:16708 (15)
CHEBI:17154 (15)
CHEBI:17568 (15)
CHEBI:17368 (15)
CHEBI:16335 (14)
CHEBI:16359 (14)
CHEBI:16828 (14)
CHEBI:17351 (14)
CHEBI:16750 (13)
CHEBI:17015 (13)
CHEBI:7916 (13)
CHEBI:16467 (13)
CHEBI:55328 (13)
CHEBI:16015 (13)
CHEBI:17596 (13)
CHEBI:15756 (13)
CHEBI:17203 (12)
CHEBI:18050 (12)
CHEBI:28865 (12)
CHEBI:18344 (12)
CHEBI:17533 (11)
CHEBI:28875 (11)
CHEBI:27823 (11)
CHEBI:16235 (11)
CHEBI:17750 (11)
CHEBI:17405 (11)

Metabolite Name

Uracil (12)
Adenine (12)
Guanosine (12)
Uridine (12)
L-Tyrosine (12)
Hypoxanthine (12)
L-Arginine (11)
Adenosine (11)
Creatinine (11)
Creatine (11)
Inosine (11)
Nicotinamide (10)
L-Phenylalanine (10)
Succinic acid (9)
L-Histidine (9)
Cholic acid (9)
Citric acid (9)
L-Tryptophan (9)
L-Glutamine (9)
Betaine (8)
4-Pyridoxic acid (8)
Choline (8)
Taurine (8)
Riboflavin (8)
Cytidine (8)
Sucrose (8)
Pyruvic acid (7)
Vanillic acid (7)
Thymine (7)
Deoxycholic acid (7)

First Public Date

2025 (1)
2022 (1)
2018 (1)
2014 (1)

Modification

2x(15)N labeled L-lysine (2)
4x(15)N labeled L-arginine (2)
15.994915 (1)
57.021464 (1)

Study type

Transcription profiling by array (29)
RNA-seq of coding RNA (23)
RNA-seq of non coding RNA (5)
Unknown experiment type (4)
Other (4)
Comparative genomic hybridization by array (3)
Methylation profiling by high throughput sequencing (3)
ChIP-seq (2)
MicroRNA profiling by array (2)
Methylation profiling by array (2)
RNA-seq of total RNA (2)
Transcription profiling by RT-PCR (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2025 (922)
2022 (770)
2023 (693)
2024 (690)
2021 (677)
2020 (488)
2019 (320)
2018 (275)
2017 (230)
2016 (225)
2015 (186)
2026 (121)
2014 (116)
2012 (97)
2013 (92)
2011 (53)
2010 (27)
2008 (20)
2009 (17)
2006 (9)
2007 (7)
2005 (3)
2004 (3)
2002 (2)
2003 (1)

Lab affiliation

Northwest University (3)
Cancer Center and Research Institute of Intestinal Diseases, Shanghai Tenth People's Hospital, School of Medicine, Tongji University (2)
Department of Chemistry, Michigan State University (2)
Jiangsu Key Laboratory of Crop Genetics and Physiology/Co-Innovation Center for Modern Production Technology of Grain Crops, Key Laboratory of Plant Functional Genomics of the Ministry of Education, Yangzhou University, Yangzhou 225009, China (2)
Michigan State University (2)
Molecular Biology and the Lewis-Sigler Institute for Integrative Genomics, Princeton University, USA (2)
the First Affiliated Hospital of Chongqing Medical University (2)
1Department of Pathophysiology, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, Shanghai Jiao Tong University School of Medicine (SJTU-SM), Shanghai 200025, China. 2Institute of Health Sciences, Shanghai Institutes for Biological Sciences of Chinese Academy of Sciences and SJTU-SM, Shanghai 200025, China. (1)
BGI-Shenzhen (1)
BGI-Shenzhen,China (1)
Center for Cultivation of Subtropical Forest Resources (CCSFR), Zhejiang A & F University, Linan, Hangzhou, 311300, People's Republic of China. (1)
Center for Single-Cell Omics, School of Public Health, Shanghai Jiao Tong University School of Medicine (1)
Center for Single-Cell Omics, School of Public Health, Shanghai Jiao Tong University Schoole of Medicine (1)
College of Life Sciences, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource, National Joint Local Engineering Research Center for Rural Land Resources Use and Consolidation, Nanjing Agricultural University (1)
College of Life Sciences, Nanjing Agricultural University, Nanjing, 210095, China (1)
College of Life Sciences, Northwest University (1)
College of Life Sciences, Northwest University, Xi’an 710069, China (1)
College of Veterinary Medicine, China Agricultural University, Beijing 100193, China (1)
Copenhagen Center for Glycomics (CCG), Department of Cellular and Molecular Medicine, University of Copenhagen (1)
Department of Biochemistry Biophysics and Structural Biology, Department of Biochemistry and Molecular Biophysics, Washington University in St. Louis, St. Louis, Missouri, United States (1)
Department of Biochemistry and Biophysics, University of North Carolina, Chapel Hill,NC 27599,USA (1)
Department of Endocrine and Metabolic Diseases, Shanghai Institute of Endocrine and Metabolic Diseases, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai 200025, China. (1)
Department of Immunobiology, College of Life Science and Technology, Jinan University, Guangzhou, China. (1)
Department of Molecular & Integrative Physiology,University of Michigan Medical School, 5325 Brehm Tower, 1000 Wall St., Ann Arbor, MI, 48105 (1)
Department of Pathophysiology, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, Rui-Jin Hospital, Shanghai Jiao Tong University School of Medicine (SJTU-SM), Shanghai 200025, China. (1)
Department of Pathophysiology, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, Rui-Jin Hospital, and State Key Laboratory of Oncogenes and Related Genes and Chinese Academy of Medical Sciences Research Unit (NO.2019RU043), Shanghai Cancer Institute, Shanghai Jiao Tong University School of Medicine, Shanghai 200025, China. (1)
Department of Plant Systems Biology, University of Hohenheim, 70593 Stuttgart, Germany (1)
Department of Radiology Canary Center at Stanford for Cancer Early Detection Stanford School of Medicine Stanford University (1)
Fudan University Shanghai Cancer Center, Department of Oncology, Shanghai Medical College, Fudan University, Shanghai, 200032, China. International Co-operation Laboratory on Signal Transduction, Eastern Hepatobiliary Surgery Institute/National Center for Liver Cancer, Naval Medical University. 225 Changhai Road, 200438 Shanghai, China. (1)
Hu Bei province,enshi Acandemy of Agricutural sciences (1)

Tags

xref:PubMed:23747202 (1)
xref:PubMed:30457566 (1)
xref:PubMed:32055844 (1)
xref:PubMed:34412677 (1)
xref:PubMed:31903125 (1)
xref:PubMed:23365080 (1)

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Phenolic Acid and Flavonoid Content Analysis with Antioxidant Activity Assessment in Chinese <i>C. pi. Shen</i> Honey.

Not available

S-EPMC11767644 | biostudies-literature

Astrocyte elevated gene-1 (AEG-1) and c-Myc cooperate to promote hepatocarcinogenesis

Double transgenic mice with hepatocyte-specific expression of AEG-1 and c-Myc show aggressive HCC compared to single transgenics. Gene expression was analyzed to understand the molecular mechanism by which AEG-1 and c-Myc cooperate to promote hepatocarcinogenesis. Livers were collected from naïve ad...

ORGANISM(S): Mus musculus

2014-09-30 | E-GEOD-61875 | biostudies-arrayexpress

Protective Effects of Pt-N-C Nanozymes against Myocardial Ischemia-reperfusion Injury

Effective therapeutic strategies for myocardial ischemia/reperfusion (I/R) injury are still lacking. Targeting reactive oxygen species (ROS), the major cause of I/R injury, provides a practical approach to alleviate myocardial damage after reperfusion procedure. Herein, we synthesized an innovative ...

ORGANISM(S): Mus Musculus

2024-01-16 | PXD048584 |

Expression analysis of Tim-3 knockdown RAW264.7 cell

Investigation of whole genome gene expression level changes in a Tim-3 knockdown RAW264.7 cell, compared to control siRNA transfected RAW264.7 cell. The Tim-3 knockdown of this cell render it hyper-reactive to TLR stimulation. Tim-3 knockdown analyzed in this study are further described in Li Y, Fen...

ORGANISM(S): Mus musculus

2012-12-05 | GSE42729 | GEO

PRODH regultes naive pluripotency by influencing mitochondrial oxidative phosphorylation (Untargeted metabolomics)

Naïve human embryonic stem cells (hESCs) that resemble the pre-implantation epiblasts are fueled by a combination of aerobic glycolysis and oxidative phosphorylation, but their mitochondrial regulators are poorly understood. Here we report that, proline dehydrogenase (PRODH), a mitochondria-local...

2024-02-12 | MTBLS7840 | MetaboLights

Linked PNPLA3 polymorphisms confer susceptibility to nonalcoholic steatohepatitis and decreased viral load in chronic hepatitis B.

Not available

S-EPMC4515841 | biostudies-literature

Ren-Shen-Bu-Qi decoction alleviates exercise fatigue through activating PI3K/AKT/Nrf2 pathway in mice.

Not available

S-EPMC11539552 | biostudies-literature

Chinese Herbal Complex 'Bu Shen Jie Du Fang' (BSJDF) Modulated Autophagy in an MPP⁺-Induced Cell Model of Parkinson's Disease.

Not available

S-EPMC6436328 | biostudies-literature

Shen-Shuai-Ning granule decreased serum concentrations of indoxyl sulphate in uremic patients undergoing peritoneal dialysis.

Not available