Shen He H - OmicsDI

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Unknown (2233)
Proteomics (51)
Transcriptomics (24)
Metabolomics (16)
Genomics (6)
Multiomics (3)
Models (1)

Organisms

Andropogon gerardi (30)
Bacteria (30)
Canis lupus familiaris (30)
Chromatiales bacterium OalgGamma1 (30)
Clavibacter nebraskensis NCPPB 2581 (30)
Cnidaria (30)
Ensifer adhaerens (30)
Fasciola (30)
Human alphaherpesvirus 1 strain 17 (30)
Human alphaherpesvirus 1 strain KOS (30)
Human betaherpesvirus 5 (30)
Human herpesvirus 2 strain 186 (30)
Mesocricetus auratus (30)
Miscanthus x giganteus (30)
Mus musculus (30)
Panicum virgatum (30)
Homo sapiens (23)
Mus musculus (11)
Arabidopsis thaliana (4)
Oryza sativa (2)
Chlamydomonas reinhardtii (1)
unidentified microorganism (1)
uncultured bacterium (1)
Zea mays (1)
Oryza sativa Japonica Group (1)
Saccharomyces cerevisiae (1)
Rattus norvegicus (1)
Human parechovirus strain T82-0169 (1)
Severe acute respiratory syndrome coronavirus 2 (1)
Sinohyriopsis cumingii (1)

Repository

pride (30)
biostudies-arrayexpress (27)
iProX (16)
MetaboLights (14)
EGA (3)
PeptideAtlas (3)
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MassIVE (2)
BioModels (1)

Tissue

Others (3)
Cell culture (3)
Heart (3)
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Brain (1)
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Root (1)
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T cell (1)

Disease

Stomach carcinoma (2)
Cardiovascular system disease (1)
Malaria (1)
Stomach cancer (1)

Technology Type

Mass Spectrometry (30)
Shotgun proteomics (20)
Mass spectrometry (12)
Bottom-up proteomics (3)
All-ion fragmentation (2)
NMR spectroscopy (1)
Mass spectrometry assay (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Data-dependent acquisition (1)
Data-independent acquisition (1)
Gel-based experiment (1)
Proteogenomics (1)
Top-down proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (8)
Liquid Chromatography MS - negative - reverse phase (6)
Liquid Chromatography MS - negative - hilic (3)
Liquid Chromatography MS - positive - hilic (3)
Q Exactive HF (2)
TripleTOF 6600 (2)
LTQ Orbitrap Elite (2)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2000 (1)
Bruker (1)
Xevo G2 QTOF (Waters) (1)
MS Imaging - (1)
QExactive (1)

Publication Date

2025 (13)
2023 (10)
2014 (8)
2013 (7)
2020 (7)
2021 (6)
2018 (6)
2017 (6)
2016 (4)
2012 (4)
2011 (4)
2022 (4)
2015 (3)
2019 (3)
2010 (2)
2005 (1)
2024 (1)
2026 (1)

UNIPROT ID/AC

A0A024R563 (3)
A0A024R8H9 (3)
A0A024RAN2 (3)
A0A024RC46 (3)
A0A087WUD1 (3)
A0A087WVZ5 (3)
A0A087WWK8 (3)
A0A087WXI0 (3)
A0A087WZE9 (3)
A0A087X1S3 (3)
A0A0A0MR66 (3)
A0A0A0MS51 (3)
A0A0A0MSA7 (3)
A0A0B4J220 (3)
A0A0C4DG89 (3)
A0A0C4DGT3 (3)
A0AV96 (3)
A0AVT1 (3)
A0FGR8 (3)
A0FGR8-2 (3)
A0FGR8-6 (3)
A0JLT2 (3)
A0JNW5 (3)
A0MZ66 (3)
A0PJW6 (3)
A0PK00 (3)
A1A4S6 (3)
A1L0T0 (3)
A1L170 (3)
A1L390 (3)

ENSEMBL ID

ENSG00000147251 (3)
ENSG00000170477 (3)
ENSG00000247315 (3)

CHEBI ID

CHEBI:17295 (5)
CHEBI:16828 (5)
CHEBI:30769 (5)
CHEBI:17992 (4)
CHEBI:16709 (4)
CHEBI:15741 (4)
CHEBI:17568 (4)
CHEBI:7916 (4)
CHEBI:16704 (4)
CHEBI:16015 (4)
CHEBI:15354 (4)
CHEBI:17895 (4)
CHEBI:166769 (3)
CHEBI:49168 (3)
CHEBI:28997 (3)
CHEBI:36090 (3)
CHEBI:33508 (3)
CHEBI:28813 (3)
CHEBI:36313 (3)
CHEBI:15676 (3)
CHEBI:17066 (3)
CHEBI:16708 (3)
CHEBI:6650 (3)
CHEBI:29069 (3)
CHEBI:30746 (3)
CHEBI:17821 (3)
CHEBI:17154 (3)
CHEBI:15929 (3)
CHEBI:16566 (3)
CHEBI:16962 (3)

Metabolite Name

Citric acid (5)
Uridine (5)
Maleic acid (4)
Cortisone (4)
Glutaric acid (4)
Ethyl glucuronide (3)
Oxoglutaric acid (3)
Pyrrole-2-carboxylic acid (3)
Vanillic acid (3)
Uracil (3)
DL-Dopa (3)
L-Arginine (3)
Erythrono-1,4-lactone (3)
Gentisic acid (3)
Glyceric acid (3)
Malic acid (3)
Suberic acid (3)
Adipic acid (3)
Adenine (3)
Sucrose (3)
L-Tyrosine (3)
Luteolin 7-(6''-malonylneohesperidoside) (2)
PGJ3 (2)
Daidzein 6''-O-acetate (2)
19-hydroxy-PGB2 (2)
Isoorientin 4'-O-glucoside-2''-O-(E)-caffeate (2)
2beta-5,7-Trihydroxyflavanone (2)
4-Hydroxy-4-methyltetrahydro-2H-pyran-2-one (2)
Procyanidin B2 (2)
Quercetin 3-galactoside (2)

IsPrivate

False (1)

Model Flag

Non Kinetic (1)

Modification

2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)

Study type

RNA-seq of coding RNA (9)
Transcription profiling by array (8)
Methylation profiling by high throughput sequencing (3)
Other (2)
RNA-seq of non coding RNA (2)
ChIP-chip by tiling array (1)
Transcription profiling by tiling array (1)
Comparative genomic hybridization by array (1)

Release Date

2025 (358)
2022 (298)
2023 (295)
2024 (279)
2021 (238)
2020 (173)
2019 (112)
2018 (91)
2017 (85)
2016 (82)
2015 (53)
2026 (47)
2014 (45)
2012 (30)
2013 (27)
2011 (19)
2010 (11)
2009 (7)
2008 (6)
2007 (1)
2006 (1)
2005 (1)
2002 (1)

Lab affiliation

Institutes of Biomedical Sciences and department of Chemistry, Fudan University, Shanghai, China (6)
Department of Biomedical Engineering, College of Life Science and Technology, Huazhong University of Science and Technology, N0. 1037 Luoyudong Road, Hongshan District, Wuhan 430074 (2)
the First Affiliated Hospital of Chongqing Medical University (2)
Center for Cultivation of Subtropical Forest Resources (CCSFR), Zhejiang A & F University, Linan, Hangzhou, 311300, People's Republic of China. (1)
Chongqing Medical University (1)
College of Horticulture and Landscape Architecture, Yangzhou University, Yangzhou (1)
College of Life and Environmental Science, Hangzhou Normal University, Hangzhou 310036, China; Zhejiang Provincial Key Laboratory for Genetic Improvement and Quality Control of Medicinal Plants, Hangzhou Normal University, Hangzhou 310036, China (1)
Department of Analytical Chemistry and CAS Key Laboratory of Receptor Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, China (1)
Department of Biological Sciences, National University of Singapore, 14 Science Drive 4, Singapore, 117543 (1)
Department of Bioloigcal Science, National University of Singapore (1)
Department of Cancer Biology, Dana-Farber Cancer Institute Department of Cell Biology, Harvard Medical School (1)
INSTITUTE OF ZOOLOGY, CHINESE ACADEMY OF SCIENCES (1)
Institute of Immunology and Department of Orthopaedics of the Second Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, Zhejiang 310058, China (1)
Institute of Reproductive Health, Tong Ji Medical College, Hua Zhong University of Science and Technology, Wuhan, China. (1)
Institute of Reproductive Medicine, Medical School, Nantong University, Nantong 226001, China (1)
Jiangsu Key Laboratory of Crop Genetics and Physiology/Co-Innovation Center for Modern Production Technology of Grain Crops, Key Laboratory of Plant Functional Genomics of the Ministry of Education, Yangzhou University, Yangzhou 225009, China (1)
Nanjing Agricultural University, (1)
National Center for Protein Sciences (The PHOENIX center, Beijing) (1)
Pathophysiology (1)
School of Pharmaceutical Sciences, Key Laboratory of Biotechnology Pharmaceutical Engineering, Wenzhou Medical University, Wenzhou, Zhejiang, P. R. China (1)
Sichuan University (1)
State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, South China Agricultural University, Guangzhou, China (1)
nanjing agriculture university (1)

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DNA Cytosine Hydroxymethylation Levels Are Distinct Among Peripheral Blood Leukocytes

Peripheral blood leukocytes are the most commonly used surrogates to study epigenome-induced risk and epigenomic response to disease related stress. We considered the hypothesis that the TET enzyme catalyzed hydroxymethylation of 5mC to 5hmC might vary among peripheral blood leukocytes and reflect t...

ORGANISM(S): Homo sapiens

2016-07-05 | E-GEOD-70519 | biostudies-arrayexpress

He-Jie-Shen-Shi Decoction as an Adjuvant Therapy on Severe Coronavirus Disease 2019: A Retrospective Cohort and Potential Mechanistic Study.

Not available

S-EPMC8250425 | biostudies-literature

Yi Shen Tiao Gan decoction alleviates aromatase inhibitor-related bone loss by promoting H-type vessel formation.

Not available

S-EPMC11999221 | biostudies-literature

The protective effect of yi shen juan bi pill in arthritic rats with castration-induced kidney deficiency.

Not available

S-EPMC3329149 | biostudies-literature

Alterations in the gut microbiome and metabolome profiles of septic mice treated with Shen FuHuang formula.

Not available

S-EPMC10030955 | biostudies-literature

Effectiveness of Yi-Zhi-An-Shen granules on cognition and sleep quality in older adults with amnestic mild cognitive impairment: protocol for a randomized, double-blind, placebo-controlled trial.

Not available

S-EPMC6701140 | biostudies-literature

Effects of optineurin siRNA on apoptotic genes and apoptosis in RGC-5 cells.

Not available

S-EPMC3244489 | biostudies-literature

Zi Shen Wan Fang Attenuates Neuroinflammation and Cognitive Function Via Remodeling the Gut Microbiota in Diabetes-Induced Cognitive Impairment Mice.

Not available

S-EPMC9335489 | biostudies-literature

Shi-Zhen-An-Shen Decoction, a Herbal Medicine That Reverses Cuprizone-Induced Demyelination and Behavioral Deficits in Mice Independent of the Neuregulin-1 Pathway.

Not available

S-EPMC7932787 | biostudies-literature

iTRAQ-based quantitative proteomics of eggplant root treated with waterlogging stress

Cultivated eggplant XN, a waterlogging-tolerant variety, were treated with waterlogging stress, and the root of XN eggplant were harvested at the time point of 0, 6, 12, and 24 h post treatment ,relatively. iTRAQ-based quantitative proteomics was performed to analyze protein dynamics in eggplant roo...

ORGANISM(S): Solanum melongena

2023-07-20 | PXD041747 | Pride

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2331 Results

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