Shen K M KM - OmicsDI

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Unknown (381)
Proteomics (7)
Metabolomics (6)
Transcriptomics (3)

Organisms

Homo sapiens (5)
Mus musculus (4)

Repository

MetaboLights (6)
pride (5)
biostudies-arrayexpress (3)
jPOST (1)
MassIVE (1)

Tissue

Cell culture (1)
Early embryonic cell (1)
Macrophage (1)
Skin (1)
Synovial cell (1)

Disease

Synovial sarcoma (1)

Technology Type

Mass spectrometry (5)
Mass Spectrometry (5)
Affinity purification coupled with mass spectrometry proteomics (2)
Mass spectrometry assay (1)
Bottom-up proteomics (1)
Data-independent acquisition (1)
SWATH MS (1)
Shotgun proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (5)
Illumina NovaSeq 6000 (1)
Exactive Plus (1)
Liquid Chromatography MS - positive (1)

Publication Date

2023 (6)
2020 (3)
2014 (1)
2008 (1)
2021 (1)
2024 (1)
2026 (1)
2025 (1)
2022 (1)

CHEBI ID

CHEBI:16359 (3)
CHEBI:28865 (3)
CHEBI:35038 (3)
CHEBI:139138 (2)
CHEBI:143745 (2)
CHEBI:143757 (2)
CHEBI:173703 (2)
CHEBI:182784 (2)
CHEBI:195271 (2)
CHEBI:27432 (2)
CHEBI:27997 (2)
CHEBI:34494 (2)
CHEBI:34687 (2)
CHEBI:64563 (2)
CHEBI:73858 (2)
CHEBI:75342 (2)
CHEBI:80774 (2)
CHEBI:10136 (1)
CHEBI:116314 (1)
CHEBI:131342 (1)
CHEBI:145227 (1)
CHEBI:16113 (1)
CHEBI:16196 (1)
CHEBI:16235 (1)
CHEBI:16312 (1)
CHEBI:165384 (1)
CHEBI:16551 (1)
CHEBI:16610 (1)
CHEBI:166468 (1)
CHEBI:166710 (1)

Metabolite Name

Cholic acid (3)
Tris(2-butoxyethyl) phosphate (3)
(2S,3S,4S,5R,6R)-6-[[(3S,4S,6aR,6bS,8aR,9R,12aS,14bR)-9-hydroxy-4-(hydroxymethyl)-4,6a,6b,8a,11,11,14b-heptamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-5-[(2S,3R,4S,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxyoxane-2-carboxylic acid (2)
1-({[2-(2-furylmethyl)-5-methylpyrrolidinyl]amino}methylene)-7-[8-({[2-(2-fury lmethyl)pyrrolidinyl]amino}methylene)-1,6-dihydroxy-3-methyl-5-(methylethyl)-7 -oxo(2-naphthyl)]-3,8-dihydroxy-6-methyl-4-(methylethyl)naphthalen-2-one (2)
1-Stearoyl-2-hydroxy-sn-glycero-3-phosphocholine (2)
2,6-Di-tert-butyl-4-hydroxymethylphenol (2)
9(10)-EpOME (2)
Alpha-linolenic acid|linolenic acid|(9Z,12Z,15Z)-octadeca-9,12,15-trienoic acid (2)
Dibutyl phthalate (DBP) (2)
Elaidic acid (2)
Lyso-PC(16:0) (2)
Monoolein (2)
NCGC00385123-01_C22H30O6_7b,9-Dihydroxy-3-(hydroxymethyl)-1,1,6,8-tetramethyl-5-oxo-1,1a,1b,4,4a,5,7a,7b,8,9-decahydro-9aH-cyclopropa[3,4]benzo[1,2-e]azulen-9a-yl acetate (2)
Taurocholic acid (2)
(R)-4-((3R,4R,5S,8S,9S,10R,13R,14S,17R)-3,4-dihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoic acid (1)
(R)-4-((3R,5S,7R,8R,9S,10S,12S,13R,14S,17R)-3,7,12-trihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoic acid (1)
1,3,5-triprop-2-enyl-1,3,5-triazaperhydroine-2,4,6-trione (1)
1,4a-dimethyl-9-oxo-7-propan-2-yl-3,4,10,10a-tetrahydro-2H-phenanthrene-1-carboxylic acid (1)
1-(9Z-Octadecenoyl)-sn-glycero-3-phosphocholine (1)
1-Heptadecanoyl-sn-glycero-3-phosphocholine (1)
1-Hexadecanoyl-sn-glycerol (1)
1-Hexadecyl-sn-glycero-3-phosphocholine (1)
1-Myristoyl-2-stearoyl-sn-glycero-3-phosphocholine (1)
1-Myristoyl-sn-glycero-3-phosphocholine (1)
1-Palmitoyl-2-myristoyl-sn-glycero-3-phosphocholine (1)
13(S)-HODE methyl ester (1)
13-Keto-9Z,11E-octadecadienoic acid (1)
16-Hydroxyhexadecanoic acid (1)
17(18)-EpETE (1)
2-((4R)-4-((3R,5R,6S,9S,10R,13R,14S,17R)-3,6-dihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanamido)ethane-1-sulfonic acid (1)

Study type

Transcription profiling by array (2)
RNA-seq of coding RNA from single cells (1)

Release Date

2018 (45)
2020 (36)
2016 (32)
2022 (31)
2024 (30)
2023 (29)
2021 (26)
2012 (25)
2015 (24)
2017 (23)
2013 (18)
2025 (16)
2019 (15)
2014 (14)
2011 (10)
2008 (3)
2026 (3)
2006 (2)
2010 (1)
2009 (1)

Lab affiliation

AbbVie Bioresearch Center (1)
Amgen (1)
Max Planck Institute of Immunobiology and Epigenetics Proteomics Unit Stuebeweg 51 79108 Freiburg, Germany (1)
UCSF (1)
Virginia Commonwealth University (1)

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The CK1α Activator Pyrvinium Enhances the Catalytic Efficiency (k_cat/K_m) of CK1α.

Not available

S-EPMC6942998 | biostudies-literature

Phase II Study of Hemithoracic Intensity-Modulated Pleural Radiation Therapy (IMPRINT) As Part of Lung-Sparing Multimodality Therapy in Patients With Malignant Pleural Mesothelioma.

Not available

S-EPMC5019761 | biostudies-literature

Monoclonal antibodies targeting the HR2 domain and the region immediately upstream of the HR2 of the S protein neutralize in vitro infection of severe acute respiratory syndrome coronavirus.

Not available

S-EPMC1346840 | biostudies-literature

Multipart Chaperone-Effector Recognition in the Type III Secretion System of Chlamydia trachomatis.

Not available

S-EPMC4653673 | biostudies-literature

Gene expression of murine B cells activated via TLR4 or TLR4 + CD40: Group1 naM-CM-/ve B cells, Group2 LPS activated B cells 24h, Group3 LPS + anti-CD40 activated B cells 24h, Group4 LPS activated B cells 72h, and Group5 LPS + anti-CD40 activated B cells 72h.

Murine B cells can be activated via the surface receptors TLR4 and CD40. For a global assessment of differences in gene expression between these two different modes of B cell activation a genome wide transcriptome analysis was performed. In order to dissect different gene expression profiles of B ce...

ORGANISM(S): Mus musculus

2014-02-24 | E-GEOD-35998 | biostudies-arrayexpress

dTrmt10A impacts Hsp70 chaperone m⁶A levels and the stress response in the Drosophila brain.

Not available

S-EPMC10754819 | biostudies-literature

Construction of a modular analysis framework for blood Genomics Studies

We designed a strategy for microarray analysis that is based on the identification of transcriptional modules formed by genes coordinately expressed in multiple disease data sets. Mapping changes in gene expression at the module level generated disease-specific transcriptional fingerprints that prov...

ORGANISM(S): Homo sapiens

2008-08-11 | E-GEOD-11908 | biostudies-arrayexpress

Metabolomics to elucidate the effects of novel sustainable feed additives in the feed of farmed salmon (HoloFood Trial C - blue mussel ensilage-dose response)

Testing the effect of blue mussel ensilage as a novel cost-efficient protein feed source for Atlantic salmon feed. Fermentation of novel raw materials for fish feed is a new practice with little prior experience of direct relevance to aquaculture and fish farming. In Trial C, alternative processi...

2023-06-13 | MTBLS4384 | MetaboLights

Comprehensive Analysis of the Expression and Prognosis for RAD51 Family in Human Breast Cancer.

Not available

S-EPMC9115836 | biostudies-literature

Isolation and identification of a feather degrading Bacillus tropicus strain Gxun-17 from marine environment and its enzyme characteristics.

Not available

S-EPMC8935741 | biostudies-literature