Shen Pan P - OmicsDI

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Unknown (829)
Metabolomics (30)
Proteomics (27)
Transcriptomics (24)
Genomics (5)
Other (1)

Organisms

Bombyx mori (19)
Klebsiella pneumoniae (19)
Schizosaccharomyces pombe (19)
Human immunodeficiency virus 1 (19)
Oryza sativa Indica Group (19)
Sinorhizobium meliloti BL225C (19)
Sus scrofa domesticus (19)
Ostreococcus tauri (19)
Saccharomyces cerevisiae (19)
Synechocystis sp. PCC 6803 (19)
Olavius algarvensis Gamma 1 endosymbiont (19)
Vitis vinifera (19)
Staphylococcus aureus (19)
Rattus norvegicus (19)
Rattus rattus (19)
Pseudomonas aeruginosa (19)
Olavius algarvensis Delta 4 endosymbiont (19)
Escherichia coli (19)
Candida albicans (19)
Cyanophora paradoxa (19)
Mus musculus (16)
Homo sapiens (12)
Tardigrada (2)
Capra hircus (1)
Campylobacter jejuni (1)
Rattus rattus (1)
Nicotiana tabacum (1)
Rattus norvegicus (1)
Sus scrofa (1)
Oryctolagus cuniculus (1)

Repository

MetaboLights (30)
biostudies-arrayexpress (29)
pride (19)
iProX (8)
GPMDB (1)

Tissue

Cell culture (7)
Brain (3)
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Macrophage (1)
Seminal plasma (1)
Stem cell (1)
Testis (1)
Leaf (1)
Hepatocyte (1)
Epithelial cell (1)
Kidney (1)
Liver (1)

Disease

Not Available (1)
Non-alcoholic steatohepatitis (1)
Malaria (1)
Breast cancer (1)

Technology Type

Mass Spectrometry (19)
Mass spectrometry (18)
Mass spectrometry assay (12)
Data-independent acquisition (6)
Shotgun proteomics (6)
SWATH MS (5)
Bottom-up proteomics (4)
Data-dependent acquisition (2)
Affinity purification coupled with mass spectrometry proteomics (2)
SRM/MRM (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (14)
Liquid Chromatography MS - negative - reverse phase (12)
Illumina NovaSeq 6000 (6)
Liquid Chromatography MS - alternating - reverse-phase (3)
Liquid Chromatography MS - negative - hilic (3)
Liquid Chromatography MS - positive - hilic (3)
Liquid Chromatography MS - positive - reverse-phase (2)
Liquid Chromatography MS - negative - reverse-phase (2)
NanoDrop 2000 spectrophotometer (1)
Instrument (1)
Liquid Chromatography MS - negative - HILIC - Triple 6600 (AB Sciex) (1)
Liquid Chromatography MS - negative - HILIC - TripleTOF 6600 (AB Sciex) (1)
MS Imaging - negative (1)
Liquid Chromatography MS - positive - HILIC - TripleTOF 6600 (AB Sciex) (1)
Liquid Chromatography MS - positive - HILIC - TripleTOF 6600 (AB sciex) (1)
Liquid Chromatography MS - alternating – hilic (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - alternating - reverse phase (1)

Publication Date

2025 (16)
2026 (14)
2012 (10)
2022 (8)
2024 (7)
2019 (5)
2013 (4)
2011 (3)
2021 (3)
2014 (2)
2010 (2)
2023 (2)
2020 (2)
2016 (1)
2015 (1)
2027 (1)
2018 (1)

CHEBI ID

CHEBI:17368 (12)
CHEBI:17015 (11)
CHEBI:16704 (11)
CHEBI:16919 (11)
CHEBI:17596 (11)
CHEBI:17533 (10)
CHEBI:16750 (10)
CHEBI:15891 (10)
CHEBI:16015 (10)
CHEBI:73688 (9)
CHEBI:18295 (9)
CHEBI:16335 (9)
CHEBI:17687 (9)
CHEBI:28997 (8)
CHEBI:16680 (8)
CHEBI:16927 (8)
CHEBI:17802 (8)
CHEBI:16708 (8)
CHEBI:17562 (8)
CHEBI:16870 (8)
CHEBI:28842 (8)
CHEBI:16235 (8)
CHEBI:17568 (8)
CHEBI:73024 (8)
CHEBI:21547 (8)
CHEBI:17295 (8)
CHEBI:18344 (8)
CHEBI:2065 (7)
CHEBI:48957 (7)
CHEBI:17202 (7)

Metabolite Name

Hypoxanthine (13)
Taurine (12)
Guanosine (11)
Creatine (11)
Riboflavin (10)
Cytidine (10)
Inosine (10)
Xanthosine (9)
Adenosine (9)
Histamine (9)
Adenine (9)
Uridine (9)
Uracil (8)
Betaine (8)
Indole (8)
Choline (8)
Oleamide (8)
Cytosine (8)
Glycine (7)
Thiamine (7)
5'-Methylthioadenosine (7)
4-Pyridoxic acid (7)
L-Histidine (7)
Phenylacetylglycine (7)
Cholic acid (7)
Proline (7)
L-Glutamine (7)
L-Glutamate (7)
N-Succinyl-L-glutamate (6)
N-Acetyl-L-leucine (6)

Study type

Transcription profiling by array (9)
RNA-seq of coding RNA (6)
Transcription profiling by RT-PCR (5)
ChIP-seq (4)
Comparative genomic hybridization by array (1)
RIP-seq (1)
Other (1)
Methylation profiling by array (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2025 (127)
2022 (106)
2023 (100)
2024 (98)
2021 (87)
2020 (79)
2018 (40)
2019 (38)
2015 (32)
2016 (26)
2017 (25)
2014 (24)
2012 (21)
2026 (19)
2013 (12)
2011 (8)
2010 (6)
2009 (6)
2008 (3)
2007 (1)

Lab affiliation

Department of Orthopedic Surgery, Sir Run Run Shaw Hospital, Medical College of Zhejiang University, Hangzhou City, China. (3)
Shanghai Institute of Materia Medica (2)
Institutes of Biomedicine Science, Fudan University (1)
Institute of Reproductive Health, Tong Ji Medical College, Hua Zhong University of Science and Technology, Wuhan, China. (1)
Joint International Research Laboratory of Metabolic & Developmental Sciences, Key Laboratory of Urban Agriculture (South) Ministry of Agriculture, Plant Biotechnology Research Center, Fudan-SJTU-Nottingham Plant Biotechnology R&D Center, School of Agriculture and Biology, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai 200240, P. R. China (1)
Department of Orthopedics, the Eighth Affiliated Hospital of Sun Yat-sen University, Shenzhen 518003, P.R. China (1)
State Key Laboratory of Medical Proteomics, National Chromatographic R. & A. Center, CAS Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, 457 Zhongshan Road, Dalian 116023, China. (1)
nanjing agriculture university (1)
Institute of Soil Science (1)
fudan university (1)
West China Second University Hospital, Sichuan University (1)
Jiangsu Key Laboratory of Crop Genetics and Physiology/Co-Innovation Center for Modern Production Technology of Grain Crops, Key Laboratory of Plant Functional Genomics of the Ministry of Education, Yangzhou University, Yangzhou 225009, China (1)
Department of Orthopedic Surgery, Sir Run Run Shaw Hospital, Medical College of Zhejiang University, Hangzhou City, China (1)
Department of Cardiology, Renmin Hospital of Wuhan University, Wuhan 430060, China (1)
westlake university (1)
Hubei University of Medicine, Taihe Hospital (1)

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Subsets of visceral adipose tissue nuclei with discrete levels of 5-hydroxymethylcytosine

We explored the hypothesis that adipose tissue contains epigenetically distinct subpopulations of adipocytes that are differentially potentiated to record cellular memories of their environment. Adipocytes are large, fragile, and technically difficult to efficiently isolate and fractionate. We devel...

ORGANISM(S): Sus scrofa

2016-07-20 | E-GEOD-73684 | biostudies-arrayexpress

Pan-Cancer Analyses Reveal Prognostic Value of Osteomimicry Across 20 Solid Cancer Types.

Not available

S-EPMC7678014 | biostudies-literature

Wen-Shen-Tong-Luo-Zhi-Tong Decoction regulates bone-fat balance in osteoporosis by adipocyte-derived exosomes.

Not available

S-EPMC10071966 | biostudies-literature

Shen-Shuai-Ning granule decreased serum concentrations of indoxyl sulphate in uremic patients undergoing peritoneal dialysis.

Not available

S-EPMC6137246 | biostudies-literature

Chinese herbal medicine (Bu-Shen-Tian-Jing Formula) for outcomes of IVF in Chinese patients with polycystic ovary syndrome: a retrospective cohort study.

Not available

S-EPMC8515245 | biostudies-literature

Linked PNPLA3 polymorphisms confer susceptibility to nonalcoholic steatohepatitis and decreased viral load in chronic hepatitis B.

Not available

S-EPMC4515841 | biostudies-literature

Liu Shen capsule shows antiviral and anti-inflammatory abilities against novel coronavirus SARS-CoV-2 via suppression of NF-κB signaling pathway.

Not available

S-EPMC7192119 | biostudies-literature

Genome-wide occupancies of multiple transcription activators in PDLSCs induced by GIPRA

Our previous study (Environ Pollut. 2023;323:121307) has indicated that Glucose-dependent insulinotropic polypeptide receptor (GIPR) is down-regulated in periodontal ligament stem cells (PDLSCs) by cigarette and E-cig. In the current study, ChIP-seq was conducted to study the genome-wide occupancies...

ORGANISM(S): Homo sapiens

2025-08-06 | E-MTAB-15381 | biostudies-arrayexpress

A novel dual histone mark reader ZCWPW2 regulates meiotic recombination through lactylation and transcriptional control in humans and mice

Meiotic recombination ensures proper chromosome segregation and genetic diversity during gametogenesis, and its disruption leads to infertility. It is known that the dual histone methylation writer–reader system, in which PRDM9 deposits H3K4me3 and H3K36me3 marks at nucleosomes to specify recombinat...

ORGANISM(S): Homo sapiens (Human) Mus musculus (Mouse)

2026-01-07 | PXD068838 | Pride

Comprehensive Characterization of Somatic Mutations Impacting lncRNA Expression for Pan-Cancer.

Not available

S-EPMC6745513 | biostudies-literature

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