Shi M J MJ - OmicsDI

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Unknown (547)
Proteomics (14)
Metabolomics (9)
Transcriptomics (7)
Genomics (2)

Organisms

Homo sapiens (15)
Mus musculus (3)
Streptomyces coelicolor (1)
Saccharomyces cerevisiae (1)
Bos taurus (1)

Repository

pride (10)
biostudies-arrayexpress (8)
MetaboLights (8)
jPOST (2)
MassIVE (2)
EGA (1)
GNPS (1)

Tissue

Permanent cell line cell (3)
Blood cancer cell (1)
Blood cell (1)
Blood plasma (1)
Bone cancer cell line (1)
Bone marrow (1)
Brain cancer cell line (1)
Breast cancer cell (1)
Breast cancer cell line (1)
Cecum cancer cell line (1)
Cell culture (1)
Cervical cancer cell line (1)
Colonic cancer cell (1)
Colorectal cancer cell line (1)
HEK-293T cell (1)
Kidney (1)
Kidney cancer cell (1)
Liver cancer cell (1)
Lung (1)
Lymph node (1)
Macrophage (1)
Ovary cancer cell (1)
Ovary cancer cell line (1)
Prostate cancer cell (1)
Prostate cancer cell line (1)
Prostate gland (1)
Renal cancer cell line (1)
Reticulocyte (1)
Skin cancer cell (1)
Uterine cervix (1)

Disease

Anemia (1)
Breast cancer (1)
Colon cancer (1)
Disease free (1)
Hypochromic anemia (1)
Malignant neoplasm of ovary (1)
Polycystic kidney disease (1)
Prostate adenocarcinoma (1)

Technology Type

Mass Spectrometry (10)
Mass spectrometry (7)
Shotgun proteomics (5)
Bottom-up proteomics (2)
Mass spectrometry assay (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Data-dependent acquisition (1)
Data-independent acquisition (1)
Gel-based experiment (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (6)
Illumina HiSeq 2000 (2)
Illumina Genome Analyzer IIx (1)
LTQ FT (1)
MaXis (1)
Exactive Plus (1)
Orbitrap Fusion Lumos (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive (1)

Publication Date

2023 (8)
2020 (4)
2015 (2)
2006 (2)
2024 (2)
2022 (2)
2021 (2)
2014 (1)
2013 (1)
2012 (1)
2011 (1)
2008 (1)
2026 (1)
2025 (1)
2019 (1)
2017 (1)

CHEBI ID

CHEBI:16359 (3)
CHEBI:28865 (3)
CHEBI:35038 (3)
CHEBI:139138 (2)
CHEBI:143745 (2)
CHEBI:143757 (2)
CHEBI:173703 (2)
CHEBI:182784 (2)
CHEBI:195271 (2)
CHEBI:27432 (2)
CHEBI:27997 (2)
CHEBI:30769 (2)
CHEBI:34494 (2)
CHEBI:34687 (2)
CHEBI:64563 (2)
CHEBI:73858 (2)
CHEBI:75342 (2)
CHEBI:80774 (2)
CHEBI:10136 (1)
CHEBI:116314 (1)
CHEBI:131342 (1)
CHEBI:1427 (1)
CHEBI:145227 (1)
CHEBI:15422 (1)
CHEBI:15603 (1)
CHEBI:15741 (1)
CHEBI:15781 (1)
CHEBI:15846 (1)
CHEBI:15978 (1)
CHEBI:16002 (1)

Metabolite Name

Cholic acid (3)
Tris(2-butoxyethyl) phosphate (3)
(2S,3S,4S,5R,6R)-6-[[(3S,4S,6aR,6bS,8aR,9R,12aS,14bR)-9-hydroxy-4-(hydroxymethyl)-4,6a,6b,8a,11,11,14b-heptamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-5-[(2S,3R,4S,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxyoxane-2-carboxylic acid (2)
1-({[2-(2-furylmethyl)-5-methylpyrrolidinyl]amino}methylene)-7-[8-({[2-(2-fury lmethyl)pyrrolidinyl]amino}methylene)-1,6-dihydroxy-3-methyl-5-(methylethyl)-7 -oxo(2-naphthyl)]-3,8-dihydroxy-6-methyl-4-(methylethyl)naphthalen-2-one (2)
1-Stearoyl-2-hydroxy-sn-glycero-3-phosphocholine (2)
2,6-Di-tert-butyl-4-hydroxymethylphenol (2)
9(10)-EpOME (2)
Alpha-linolenic acid|linolenic acid|(9Z,12Z,15Z)-octadeca-9,12,15-trienoic acid (2)
Dibutyl phthalate (DBP) (2)
Elaidic acid (2)
Lyso-PC(16:0) (2)
Monoolein (2)
NCGC00385123-01_C22H30O6_7b,9-Dihydroxy-3-(hydroxymethyl)-1,1,6,8-tetramethyl-5-oxo-1,1a,1b,4,4a,5,7a,7b,8,9-decahydro-9aH-cyclopropa[3,4]benzo[1,2-e]azulen-9a-yl acetate (2)
Succinate (2)
Taurocholic acid (2)
(R)-4-((3R,4R,5S,8S,9S,10R,13R,14S,17R)-3,4-dihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoic acid (1)
(R)-4-((3R,5S,7R,8R,9S,10S,12S,13R,14S,17R)-3,7,12-trihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoic acid (1)
1,3,5-triprop-2-enyl-1,3,5-triazaperhydroine-2,4,6-trione (1)
1,4a-dimethyl-9-oxo-7-propan-2-yl-3,4,10,10a-tetrahydro-2H-phenanthrene-1-carboxylic acid (1)
1-(9Z-Octadecenoyl)-sn-glycero-3-phosphocholine (1)
1-Heptadecanoyl-sn-glycero-3-phosphocholine (1)
1-Hexadecanoyl-sn-glycerol (1)
1-Hexadecyl-sn-glycero-3-phosphocholine (1)
1-Myristoyl-2-stearoyl-sn-glycero-3-phosphocholine (1)
1-Myristoyl-sn-glycero-3-phosphocholine (1)
1-Palmitoyl-2-myristoyl-sn-glycero-3-phosphocholine (1)
13(S)-HODE methyl ester (1)
13-Keto-9Z,11E-octadecadienoic acid (1)
16-Hydroxyhexadecanoic acid (1)
17(18)-EpETE (1)

Study type

Transcription profiling by array (2)
RNA-seq of coding RNA (2)
Unknown experiment type (1)
ChIP-chip by tiling array (1)
Other (1)
ChIP-seq (1)

Release Date

2018 (65)
2021 (55)
2022 (50)
2024 (47)
2020 (47)
2025 (46)
2023 (38)
2019 (34)
2017 (27)
2015 (25)
2016 (23)
2014 (21)
2011 (20)
2013 (19)
2012 (14)
2026 (9)
2010 (7)
2006 (3)
2009 (3)
2008 (1)
2007 (1)

Lab affiliation

Chair of Proteomics and Bioanalytics, Technical University of Munich, Bavaria, Germany (1)
Department of Molecular & Cellular Physiology Stanford University School of Medicine (1)
Department of Pathology, Gujar Lab, Dalhousie University, Canada (1)
Department of Surgery, University of Michigan (1)
European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI) (1)
Finley and Gygi lab Cell Biology Department Harvard Medical School US (1)
Institute of Molecular Systems Biology, ETH Zürich, Switzerland (1)
Keck MS & Proteomics Resource Yale School of Medicine (1)
State Key Laboratory of Molecular Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China (1)
UCSF (1)

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The translational landscape of mTOR signaling steers cancer initiation and metastasis

The mammalian target of rapamycin (mTOR) kinase is a master regulator of protein synthesis that couples nutrient sensing to cell growth and cancer. However, the downstream translationally regulated nodes of gene expression that may direct cancer development are poorly characterized. Employing riboso...

ORGANISM(S): Homo sapiens

2012-02-28 | E-GEOD-35469 | biostudies-arrayexpress

Quantitative Proteome Responses to Oncolytic Reovirus in GM-CSF and M-CSF-Differentiated Bone Marrow-Derived Cells

To explore reovirus-macrophage interactions, we performed tandem mass tag (TMT)-based quantitative temporal proteomics on mouse bone marrow-derived macrophages (BMMs) generated with 2 cytokines, M-CSF and GM-CSF, representing anti- and pro-inflammatory macrophages, respectively. We quantified 6,863 ...

ORGANISM(S): Mus musculus (Mouse)

2020-01-07 | PXD015203 | Pride

Proteogenomic markers of chemotherapy resistance and response in triple negative breast cancer

Anurag M, Jaehnig EJ, Krug K, Lei JT, Bergstrom EJ, Kim BJ, Vashist TD, Huynh AMT, Dou Y, Gou X, Huang C, Shi Z, Wen B, Korchina V, Gibbs RA, Muzny DM, Doddapaneni H, Dobrolecki LE, Rodriguez H, Robles AI, Hiltke T, Lewis MT, Nangia J, Shafaee MN, Hagemann I, Hoog J, Lim B, Osborne CK, Mani DR, Gill...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2022-06-29 | MSV000089758 | MassIVE

Highly Oriented Bio-Mimetic Hydrogels by Calendering.

Not available

S-EPMC12376593 | biostudies-literature

Regulatory T cells promote endurance exercise adaptation by shielding muscle mitochondria from damage

Exercise enhances physical performance and reduces the risk of many disorders such as cardiovascular disease, type 2 diabetes, dementia and cancer. Exercise characteristically incites an inflammatory response, notably in skeletal muscles. While some effector mechanisms have been identified, regul...

2023-10-10 | MTBLS8391 | MetaboLights

Lymphoma Remissions Caused by Anti-CD19 Chimeric Antigen Receptor T Cells Are Associated With High Serum Interleukin-15 Levels.

Not available

S-EPMC5455597 | biostudies-literature

Gemcitabine plus nab-paclitaxel is an active regimen in patients with advanced pancreatic cancer: a phase I/II trial.

Not available

S-EPMC3565012 | biostudies-literature

Hierarchically structuralized hydrogels with ligament-like mechanical performance.

Not available

S-EPMC12749280 | biostudies-literature

A Highly Durable Rubber-Derived Lithium-Conducting Elastomer for Lithium Metal Batteries.

Not available