Shi Na N - OmicsDI

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Unknown (343)
Transcriptomics (34)
Proteomics (34)
Metabolomics (11)
Genomics (10)

Organisms

Homo sapiens (41)
Mus musculus (15)
Hordeum vulgare subsp. vulgare (2)
Rattus norvegicus (2)
Danio rerio (2)
Waddlia chondrophila (1)
Cucumis sativus (1)
Prunus persica (1)
Xenopus tropicalis (1)
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Neisseria meningitidis (1)
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Oryza sativa Japonica Group (1)
Caenorhabditis elegans (1)
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Escherichia coli (1)
Escherichia coli str. K-12 substr. MG1655 (1)
Arabidopsis thaliana (1)
Rattus rattus (1)

Repository

biostudies-arrayexpress (45)
pride (21)
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Cell culture (17)
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Disease

B. dendrobatidis infection (1)
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Anemia (1)
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Technology Type

Mass Spectrometry (21)
Shotgun proteomics (17)
Mass spectrometry (10)
Bottom-up proteomics (2)
Mass spectrometry assay (1)
Data-dependent acquisition (1)
Data-independent acquisition (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (6)
Illumina NovaSeq 6000 (4)
Liquid Chromatography MS - positive (3)
Illumina NovaSeq X (2)
Liquid Chromatography MS - negative (2)
-- (1)
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NA (1)
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Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2021 (17)
2025 (11)
2016 (11)
2024 (9)
2023 (8)
2015 (7)
2026 (3)
2014 (3)
2013 (3)
2009 (3)
2018 (2)
2012 (2)
2011 (2)
2010 (2)
2017 (2)
2022 (2)
2008 (1)
2007 (1)

CHEBI ID

CHEBI:64563 (6)
CHEBI:28865 (5)
CHEBI:116314 (4)
CHEBI:16359 (4)
CHEBI:27432 (4)
CHEBI:34494 (4)
CHEBI:15354 (3)
CHEBI:15940 (3)
CHEBI:16467 (3)
CHEBI:16870 (3)
CHEBI:17015 (3)
CHEBI:17295 (3)
CHEBI:17351 (3)
CHEBI:27997 (3)
CHEBI:34687 (3)
CHEBI:35038 (3)
CHEBI:43580 (3)
CHEBI:64561 (3)
CHEBI:72737 (3)
CHEBI:72842 (3)
CHEBI:75304 (3)
CHEBI:80774 (3)
CHEBI:131988 (2)
CHEBI:132547 (2)
CHEBI:138560 (2)
CHEBI:139123 (2)
CHEBI:139138 (2)
CHEBI:142219 (2)
CHEBI:143745 (2)
CHEBI:143757 (2)

Metabolite Name

Cholic acid (4)
L-Phenylalanine (3)
Linoleic acid (3)
Taurocholic acid (3)
Tris(2-butoxyethyl) phosphate (3)
(2S,3S,4S,5R,6R)-6-[[(3S,4S,6aR,6bS,8aR,9R,12aS,14bR)-9-hydroxy-4-(hydroxymethyl)-4,6a,6b,8a,11,11,14b-heptamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-5-[(2S,3R,4S,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxyoxane-2-carboxylic acid (2)
1-({[2-(2-furylmethyl)-5-methylpyrrolidinyl]amino}methylene)-7-[8-({[2-(2-fury lmethyl)pyrrolidinyl]amino}methylene)-1,6-dihydroxy-3-methyl-5-(methylethyl)-7 -oxo(2-naphthyl)]-3,8-dihydroxy-6-methyl-4-(methylethyl)naphthalen-2-one (2)
1-Stearoyl-2-hydroxy-sn-glycero-3-phosphocholine (2)
2,6-Di-tert-butyl-4-hydroxymethylphenol (2)
3-Hydroxybutyric acid (2)
3-Indolepropionic acid (2)
4-Hydroxybenzaldehyde (2)
4-Hydroxybenzoic acid (2)
4-Pyridoxic acid (2)
9(10)-EpOME (2)
9-Oxo-10E,12Z-octadecadienoic acid (2)
Azelaic acid (2)
Chenodeoxycholic acid (2)
Choline (2)
Cortisol (2)
Cytidine (2)
D-Glucose (2)
D-Mannose (2)
D-Ribose (2)
Elaidic acid (2)
Fumaric acid (2)
Gluconic acid (2)
Glutaric acid (2)
Guanine (2)
Hydroxypyruvic acid (2)

Study type

RNA-seq of coding RNA (14)
Transcription profiling by array (12)
ChIP-seq (8)
Comparative genomic hybridization by array (2)
RNA-seq of non coding RNA (2)
Hi-C (1)
Other (1)
DNA-seq (1)
Methylation profiling by array (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2018 (55)
2025 (42)
2022 (39)
2020 (39)
2023 (32)
2024 (31)
2021 (28)
2019 (20)
2016 (19)
2015 (19)
2017 (12)
2026 (8)
2009 (8)
2014 (7)
2013 (7)
2011 (6)
2012 (5)
2010 (4)
2008 (2)
2002 (2)
2007 (1)
2003 (1)
2000 (1)

Lab affiliation

Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (13)
Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (1)
Divisions of Pulmonary Biology, Molecular Cardiovascular Biology and Developmental Biology Department of Pediatrics Cincinnati Children's Hospital Medical Center Cincinnati, OH 45229 (1)
Eye Center of the 2nd Affiliated Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang Province, China (1)
Finley and Gygi lab Cell Biology Department Harvard Medical School US (1)
Head of the Department, Proteomics Core (1)
Systems Biology of Signal Transduction, German Cancer Research Center Heidelberg, Germany (1)
The Institute of Cancer Research (1)
Volker Boehm Gehring Lab, Institute for Genetics, University of Cologne, 50674 Cologne, Germany (1)

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Shi Wei Ru Xiang pill alleviates acute gouty arthritis through suppressing NLRP3 inflammasome activation

Shi Wei Ru Xiang pill (SWR) is commonly utilized in Tibetan medicine as a therapeutic intervention for 'Huang-shui disease' and has been clinically validated as an effective treatment for acute gouty arthritis (AGA). Nevertheless, the underlying mechanisms of action and the active components of S...

2025-06-20 | MTBLS12617 | MetaboLights

High salt primes a specific activation state of macrophages, M(Na)

Purpose: Investigate effects of high salt on human macrophage activation Methods: Human monocytes-derived macrophages were treated by additional 51mM NaCl for 24 hours (NaCl groups) or not (Control groups). mRNA profiles were generated by RNA-Seq, in triplicate, using Ion proton（Life tech). qRT–PCR ...

ORGANISM(S): Homo sapiens

2015-09-23 | E-GEOD-68482 | biostudies-arrayexpress

KDM5C safeguards the appropriate timing of early neurodevelopment

We generated human induced pluripotent cells from intellectual disability patients carrying the c.2T>C mutation in KDM5C (Called “Mutant”). We generated a paired, isogenic human iPS cell line (called “Corrected”) using CRISPR/Cas9 and PiggyBac gene-editing technologies and conducted neuronal differe...

ORGANISM(S): Homo sapiens

2023-10-13 | E-MTAB-7551 | biostudies-arrayexpress

Synthesis and crystal structure of two manganese-based 12-metallacrown-4 complexes: Na2(3-chloro-benzoate)2[12-MCMn(III)N(shi)-4](DMF)6 and MnNa(3-chloro-benzoate)3[12-MCMn(III)N(shi)-4](DMF)(H2O)4·4DMF·0.72H2O.

Not available

S-EPMC7274016 | biostudies-literature

Structure of the rotor ring modified with N,N'-dicyclohexylcarbodiimide of the Na+-transporting vacuolar ATPase.

Not available

S-EPMC3158168 | biostudies-literature

Hydrated Sodium Ion Clusters [Na+(H2O)n (n = 1-6)]: An ab initio Study on Structures and Non-covalent Interaction.

Not available

S-EPMC6751288 | biostudies-literature

Crystal structure of tetra-aqua-(di-methyl-formamide)-tetra-kis-(μ-N,2-dioxido-benzene-1-carboximidato)tetra-kis-(μ-tri-methyl-acetato)-tetra-manganese(III)sodiumyttrium-di-methyl-formamide-water (1/8.04/0.62).