Shi V V - OmicsDI

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Unknown (2577)
Proteomics (235)
Transcriptomics (174)
Metabolomics (86)
Genomics (38)
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Genomic (3)

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Homo sapiens (214)
Mus musculus (98)
Arabidopsis thaliana (14)
Rattus norvegicus (10)
Oryza sativa (6)
Caenorhabditis elegans (4)
Danio rerio (4)
Zea mays (3)
Drosophila melanogaster (3)
Ciona intestinalis (2)
Zika virus (2)
Clostridium beijerinckii NCIMB 8052 (2)
Streptomyces coelicolor (2)
Hordeum vulgare subsp. vulgare (2)
Sus scrofa (2)
Larimichthys crocea (2)
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Myotis davidii (1)
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uncultured organism (1)
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Schmidtea mediterranea (1)
Drosophila simulans (1)
Ectocarpus siliculosus (1)
Clostridium beijerinckii (1)
Chlamydomonas reinhardtii (1)

Organisms

Mus musculus (1)

Repository

pride (211)
biostudies-arrayexpress (199)
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geo (1)
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Tissue

Cell culture (65)
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Disease

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Disease free (2)
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Represent tolerant CD4+ T cells that have not been activated (1)
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Normal (1)
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COVID-19 (1)
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Diabetic retinopathy (1)
Diffuse gastric cancer (1)
FTDALS1 (1)
Frontotemporal dementia (1)
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Lung cancer (1)
Lung carcinoma (1)
Lysosomal storage disease (1)

Technology Type

Mass Spectrometry (211)
Shotgun proteomics (115)
Mass spectrometry (65)
Bottom-up proteomics (44)
Mass spectrometry assay (18)
Data-dependent acquisition (18)
Gel-based experiment (18)
Affinity purification coupled with mass spectrometry proteomics (15)
Top-down proteomics (13)
Data-independent acquisition (8)
NMR spectroscopy (3)
Proteogenomics (2)
SWATH MS (2)
Illumina HiSeq 2000 (1)
Illumina OncoArray (1)
Affinity proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
HDMSE (1)
Metaproteomics (1)
SRM/MRM (1)

Instrument Platform

Illumina NovaSeq 6000 (11)
NextSeq 500 (5)
Illumina HiSeq 2500 (4)
Illumina HiSeq 4000 (3)
Illumina Genome Analyzer IIx (2)
HiSeq X Ten (2)
Illumina HiSeq 1500 (2)
Illumina HiSeq 2000 (2)
Illumina HiSeq 3000 (2)
LTQ Orbitrap (2)
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BRB-seq tool and pipeline (1)
NucleoSpin RNA kit (Macherey-Nagel) (1)
Gilson Minipuls 3 (1)
-- (1)
Genepix (1)
ArrayWoRx Biochip Reader [Applied Precision] (1)
Illumina Genome Analyzer II (1)
Illumina NovaSeq X (1)
NA (1)
Ion Torrent Proton (1)
TruSeq mRNA Sample Prep kit v2 (Illumina) (1)
LTQ FT (1)
MaXis (1)
LTQ Orbitrap Elite (1)
LTQ Orbitrap XL (1)
LTQ XL (1)
MS:1000031 (1)
Orbitrap Exploris 480 (1)
Orbitrap Fusion (1)

Publication Date

2024 (52)
2021 (49)
2026 (48)
2025 (48)
2023 (47)
2022 (42)
2013 (28)
2015 (27)
2016 (26)
2014 (24)
2020 (21)
2018 (17)
2011 (17)
2012 (16)
2010 (16)
2019 (12)
2017 (9)
2008 (7)
2009 (6)
2005 (4)
2007 (4)
2006 (3)
2001 (1)

UNIPROT ID/AC

P00573 (1)
P07659 (1)
P42212 (1)
2711.XP_006464469.1 (1)
2711.XP_006464485.1 (1)
2711.XP_006464486.1 (1)
2711.XP_006465039.1 (1)
2711.XP_006465481.1 (1)
2711.XP_006465554.1 (1)
2711.XP_006465598.1 (1)
2711.XP_006465717.1 (1)
2711.XP_006465764.1 (1)
2711.XP_006466032.1 (1)
2711.XP_006466189.1 (1)
2711.XP_006466240.1 (1)
2711.XP_006466243.1 (1)
2711.XP_006466346.1 (1)
2711.XP_006466347.1 (1)
2711.XP_006466348.1 (1)
2711.XP_006466352.1 (1)
2711.XP_006466586.1 (1)
2711.XP_006467060.1 (1)
2711.XP_006467330.1 (1)
2711.XP_006467511.1 (1)
2711.XP_006468195.1 (1)
2711.XP_006468459.1 (1)
2711.XP_006468477.1 (1)
2711.XP_006468930.1 (1)
2711.XP_006468931.1 (1)
2711.XP_006469038.1 (1)

CHEBI ID

CHEBI:17568 (25)
CHEBI:17596 (23)
CHEBI:17368 (22)
CHEBI:30769 (22)
CHEBI:15756 (21)
CHEBI:16027 (21)
CHEBI:16704 (21)
CHEBI:16708 (21)
CHEBI:17154 (21)
CHEBI:17351 (20)
CHEBI:17509 (20)
CHEBI:15891 (19)
CHEBI:16335 (19)
CHEBI:17295 (19)
CHEBI:15741 (18)
CHEBI:16015 (18)
CHEBI:16040 (18)
CHEBI:17533 (18)
CHEBI:18012 (18)
CHEBI:7916 (18)
CHEBI:15318 (17)
CHEBI:16359 (17)
CHEBI:16750 (17)
CHEBI:16919 (17)
CHEBI:17895 (17)
CHEBI:28842 (17)
CHEBI:17535 (1)
CHEBI:27732 (1)
CHEBI:33697 (1)
CHEBI:33699 (1)

Metabolite Name

Hypoxanthine (20)
Adenosine (19)
Inosine (19)
L-Phenylalanine (19)
Uracil (19)
Uridine (19)
Adenine (18)
Guanosine (18)
L-Histidine (18)
Creatine (17)
L-Glutamine (17)
Taurine (17)
Xanthine (17)
L-Tyrosine (16)
Cholic acid (15)
L-Proline (15)
L-Tryptophan (15)
Riboflavin (15)
Thymidine (15)
Creatinine (14)
Cytosine (14)
Guanine (14)
Cytidine (13)
L-Arginine (13)
L-Lysine (13)
L-Methionine (13)
Nicotinamide (13)
Palmitic acid (13)
L-Leucine (12)
L-Serine (12)

IsPrivate

False (3)

First Public Date

2014 (1)

Modelling Approach

Ordinary differential equation model (3)

Modification

57.021464 (1)
N6 (1)

Study type

Transcription profiling by array (87)
RNA-seq of coding RNA (51)
ChIP-seq (20)
Comparative genomic hybridization by array (5)
RNA-seq of non coding RNA (5)
Genotyping by array (4)
Methylation profiling by high throughput sequencing (4)
Transcription profiling by RT-PCR (3)
High-throughput sequencing (2)
Animal - High-throughput sequencing (2)
Transcription profiling by tiling array (2)
Single nucleus RNA sequencing (2)
Methylation profiling by array (2)
Transcription profiling by SAGE (1)
Cell line - Single-cell sequencing (1)
Unknown experiment type (1)
Human - High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
CLIP-seq (1)
Hi-C (1)
DNA-seq (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2025 (344)
2022 (304)
2023 (269)
2024 (262)
2021 (251)
2020 (212)
2018 (189)
2019 (171)
2017 (132)
2016 (110)
2015 (104)
2014 (83)
2013 (76)
2026 (54)
2012 (53)
2011 (52)
2010 (39)
2009 (22)
2008 (14)
2007 (12)
2006 (8)
2005 (6)
2004 (3)
2000 (2)
2003 (1)
2001 (1)
1998 (1)

Lab affiliation

Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (13)
Department of Cellular & Molecular Physiology, Yale School of Medicine, New Haven, CT 06520, USA. Systems Biology Institute, Yale University, New Haven, CT 06516, USA (6)
Institute for Systems Biology (4)
Agronomy College, Henan Agricultural University, China (3)
Department of Cellular & Molecular Physiology, Yale School of Medicine, New Haven, CT 06520, USA. Systems Biology Institute, Yale University, New Haven, CT 06516, USA (3)
Department of Structural Biology and Developmental Neurobiology, Center for Proteomics and Metabolomics, St. Jude Children's Research Hospital, Memphis, TN 38105, USA (3)
Keck MS & Proteomics Resource Yale School of Medicine (3)
School of Food and Biological Engineering, Hefei University of Technology, Hefei, 230009, China (3)
Stowers Institute for Medical Research (3)
Cancer Science Institute of Singapore (CSI), National University of Singapore (NUS) (2)
College of Agronomy, Jiangxi Agricultural University (2)
Howard Hughes Medical Institute Beth Israel Deaconess Medical Center Harvard Medical School (2)
Lab of Jie Zheng, Neuroscience Research Institute and Department of Neurobiology, School of Basic Medical Sciences, Peking University, Beijing 100083, P.R. China (2)
- Institute for Global Health, Hospital Clinic, Universitat de Barcelona. Barcelona. Spain. - Catalan Institution for Research and Advanced Studies, Barcelona, Spain. - Institute for Health Sciences Germans Trias I Pujol. Barcelona, Spain (1)
1. Garvan Institute of Medical Research, Cancer Ecosystems Program, and The Kinghorn Cancer Centre, Darlinghurst, Sydney, New South Wales, Australia. 2. School of Clinical Medicine, Faculty of Medicine and Health, University of New South Wales (UNSW), Kensington, Sydney, New South Wales, Australia. (1)
1. Precision Medicine Research Programme, Yong Loo Lin School of Medicine, National University of Singapore, Singapore. 2. Cardiovascular Disease Research Programme, Yong Loo Lin School of Medicine, National University of Singapore, Singapore. 3. Department of Biochemistry, Yong Loo Lin School of Medicine, National University of Singapore, Singapore. (1)
Agronomy College/National Key Laboratory of Wheat and Corn Crop/Collaborative Innovation Center of Henan Grain Crops, Henan Agricultural University ,Zhengzhou China (1)
Angiogenesis & Metabolism Laboratory, Max Planck Institut for Heart and Lung Research, 61231 Bad Nauheim, Germany (1)
Anhui Medical University (1)
Assistant professor, School of Biological Sciences, Seoul National University (1)
Assoc Prof Konstantin Pervushin SCHOOL OF BIOLOGICAL SCIENCES, Nanyang Technological University (1)
Australian Proteome Analysis Facility, Macquarie University, North Ryde, NSW, 2109, Australia (1)
Baylor College of Medicine (1)
Beijing Advanced Innovation Center for Soft Matter Science and Engineering, Beijing University of Chemical Technology (1)
Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (1)
CAS Center for Excellence in Molecular Plant Sciences (1)
CAS Key Laboratory for Quantitative Engineering Biology, Shenzhen Institute of Synthetic Biology, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences (1)
Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver V5Z 1L3, Canada. (1)
Cancer Research Institute, School of Basic Medical Science, Central South University (1)
Cancer Science Institute of Singapore (CSI), National University of Singapore (NUS (1)

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NUDCD3 deficiency disrupts V(D)J recombination to cause SCID/Omenn syndrome

Inborn errors of T cell development present a pediatric emergency in which timely curative therapy is informed by molecular diagnosis. In 9 affected patients across 3 consanguineous kindreds, we detected homozygosity for a single deleterious missense variant in the gene NudC domain containing 3 (NUD...

ORGANISM(S): Homo sapiens (Human)

2024-09-27 | PXD035840 | Pride

Performance and mechanisms for V(v) bio-reduction by straw: key influencing factors.

Not available

S-EPMC9037681 | biostudies-literature

Conserved V-ATPase c subunit plays a role in plant growth by influencing V-ATPase-dependent endosomal trafficking.

Not available

S-EPMC11388952 | biostudies-literature

Infectious CTXPhi and the vibrio pathogenicity island prophage in Vibrio mimicus: evidence for recent horizontal transfer between V. mimicus and V. cholerae.

Not available

S-EPMC97308 | biostudies-literature

Performance and Enhancement of Various Fillers Guiding Vanadium (V) Bioremediation.

Not available

S-EPMC9691244 | biostudies-literature

Analyzing the CDR3 Repertoire with respect to TCR-Beta Chain V-D-J and V-J Rearrangements in Peripheral T Cells using HTS.

Not available

S-EPMC4941575 | biostudies-literature

Identification of paramyxovirus V protein residues essential for STAT protein degradation and promotion of virus replication.

Not available

S-EPMC1143765 | biostudies-literature

Tire wear particles drive a systemic bioenergetic collapse in Eisenia fetida via coupled barrier erosion and metabolic-immune deadlock

As global vehicular electrification accelerates, the exponential accumulation of tire wear particles (TWPs) poses a pervasive threat to edaphic ecosystems. To elucidate the systemic bioenergetic impact of TWP toxicity, we performed a non-targeted metabolomic profiling of the soil sentinel earthwo...

2026-07-07 | MTBLS14967 | MetaboLights

Increased alveolar soluble annexin V promotes lung inflammation and fibrosis.

Not available

S-EPMC4767328 | biostudies-literature

The Impact of β-1,4-Galactosyltransferase V on Microglial Function.

Not available

S-EPMC8446519 | biostudies-literature

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3117 Results

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