Shi Y Y - OmicsDI

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Unknown (36121)
Proteomics (744)
Transcriptomics (249)
Metabolomics (67)
Genomics (64)
Models (3)
Multiomics (2)

Organisms

Homo sapiens (322)
Mus musculus (117)
Arabidopsis thaliana (19)
Rattus norvegicus (10)
Drosophila melanogaster (7)
Caenorhabditis elegans (6)
Saccharomyces cerevisiae (6)
Oryza sativa (4)
Bos taurus (4)
Vibrio cholerae (3)
Danio rerio (3)
Macaca mulatta (3)
Sus scrofa (3)
Clostridium beijerinckii NCIMB 8052 (2)
Thermococcus kodakarensis KOD1 (1)
Waddlia chondrophila (1)
Larimichthys crocea (1)
Pteropus alecto (1)
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Arachis hypogaea (1)
Bemisia tabaci (1)
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Yellow fever virus (1)
Bacillus subtilis subsp. subtilis (1)
Schmidtea mediterranea (1)
Lilium longiflorum (1)
Theobroma cacao (1)
Escherichia coli O157:H7 str. EDL933 (1)

Organisms

Candidatus Atelocyanobacterium thalassae (1)
Theobroma cacao (1)
Homo sapiens (1)

Repository

pride (430)
biostudies-arrayexpress (285)
iProX (218)
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PeptideAtlas (63)
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geo (1)
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Tissue

Cell culture (119)
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Cell line (1)

Disease

Disease free (11)
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Wounds and Injuries (2)
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Represent tolerant CD4+ T cells that have not been activated (1)
Ovarian cancer (1)
Pneumonia (1)
Gastric ulcer (1)
Medullary thyroid carcinoma (1)
Multidrug-resistant tuberculosis (1)
Hypochromic anemia (1)
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Eosinophilic esophagitis (1)
Lung carcinoma in situ (1)
Infertility (1)

Technology Type

Mass Spectrometry (430)
Shotgun proteomics (190)
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Mass spectrometry (55)
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Affinity purification coupled with mass spectrometry proteomics (41)
Gel-based experiment (36)
Data-independent acquisition (21)
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SWATH MS (11)
Mass spectrometry assay (7)
Chemical cross-linking coupled with mass spectrometry proteomics (7)
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NMR spectroscopy (3)
Mass spectrometry imaging (3)
MSE (3)
All-ion fragmentation (3)
DiaPASEF (3)
Illumina HiSeq 2000 (2)
Metaproteomics (2)
Proteogenomics (2)
RNA mass spectrometry (2)
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AB SOLiD 4 System (1)
Affinity proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (31)
Liquid Chromatography MS - negative - reverse phase (23)
Q Exactive (8)
Illumina HiSeq 2000 (7)
Liquid Chromatography MS - negative - hilic (7)
Illumina NovaSeq 6000 (6)
Liquid Chromatography MS - positive - hilic (5)
NextSeq 500 (3)
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MaXis (1)
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Orbitrap Fusion Lumos (1)

Publication Date

2025 (129)
2022 (100)
2024 (85)
2023 (85)
2021 (84)
2026 (58)
2020 (49)
2014 (48)
2016 (42)
2015 (39)
2010 (37)
2019 (34)
2012 (32)
2013 (30)
2011 (28)
2018 (26)
2017 (16)
2009 (9)
2005 (8)
2007 (7)
2006 (7)
2004 (3)
2008 (2)
2002 (1)
2001 (1)

UNIPROT ID/AC

A0A067FZ61_CITSI (1)
A0A067GQV1_CITSI (1)
2711.XP_006479514.1 (1)
A0A067DFZ9_CITSI (1)
A0A067FMS6_CITSI (1)
A0A067FN46_CITSI (1)
2711.XP_006488147.1 (1)
A0A067E153_CITSI (1)
A0A067GBL5_CITSI (1)
A0A067DAW0_CITSI (1)
A0A067F736_CITSI (1)
A0A067E4G7_CITSI (1)
A0A067F5B1_CITSI (1)
A0A067H4G6_CITSI (1)
A0A067GSQ9_CITSI (1)
A0A067F3J5_CITSI (1)
A0A067DL13_CITSI (1)
A0A067HBD9_CITSI (1)
A0A067FFQ8_CITSI (1)
A0A067FJK5_CITSI (1)
A0A067GDN4_CITSI (1)
A0A067GB16_CITSI (1)
A0A067E0C7_CITSI (1)
A0A067F7N5_CITSI (1)
A0A067F898_CITSI (1)
A0A067EZA9_CITSI (1)
2711.XP_006478245.1 (1)
A0A067DT91_CITSI (1)
A0A067E5T0_CITSI (1)
2711.XP_006487074.1 (1)

ENSEMBL ID

ENSG00000170477 (4)

CHEBI ID

CHEBI:17568 (21)
CHEBI:16704 (20)
CHEBI:30769 (20)
CHEBI:15756 (19)
CHEBI:16708 (18)
CHEBI:17509 (18)
CHEBI:17596 (18)
CHEBI:17368 (18)
CHEBI:15741 (17)
CHEBI:17154 (17)
CHEBI:16335 (17)
CHEBI:16027 (17)
CHEBI:16040 (16)
CHEBI:7916 (16)
CHEBI:18012 (16)
CHEBI:15891 (15)
CHEBI:32816 (15)
CHEBI:30915 (15)
CHEBI:17533 (14)
CHEBI:28842 (14)
CHEBI:16610 (14)
CHEBI:16359 (14)
CHEBI:48131 (14)
CHEBI:17295 (14)
CHEBI:17351 (14)
CHEBI:26271 (13)
CHEBI:16811 (13)
CHEBI:16750 (13)
CHEBI:28875 (13)
CHEBI:17015 (13)

Metabolite Name

Adenosine (15)
Uridine (14)
Uracil (13)
Hypoxanthine (13)
Guanine (12)
Adenine (12)
Guanosine (12)
Inosine (12)
Taurine (11)
Palmitic acid (11)
Thymidine (11)
Creatinine (11)
Pantothenic acid (10)
Cholic acid (10)
Spermidine (10)
Cytosine (10)
Creatine (10)
L-Phenylalanine (10)
L-Arginine (9)
L-Histidine (9)
Riboflavin (9)
Proline (9)
Azelaic acid (9)
Xanthine (9)
L-Methionine (9)
L-Tyrosine (9)
Pyroglutamic acid (8)
L-Lysine (8)
Glutathione (8)
L-Proline (8)

First Public Date

2024 (1)
2023 (1)
2018 (1)
2015 (1)

Modelling Approach

Random forest procedure (1)
Computational model (1)
Ordinary differential equation model (1)

Lab affiliation

Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (13)
Department of Neurology and Neurological Sciences, Stanford University, Stanford, CA, USA (6)
Xiamen University (6)
Institute of Life and Health Engineering, College of Life Science and Technology, Jinan University (4)
Sun Yat-sen University (4)
Tongji University (4)
Jiangnan University (3)
Department of Structural Biology and Developmental Neurobiology, Center for Proteomics and Metabolomics, St. Jude Children's Research Hospital, Memphis, TN 38105, USA (3)
Agronomy College, Henan Agricultural University, China (3)
School of Life Sciences, Southern University of Science and Technology, Shenzhen 518055, Guangdong, China (3)
Tianjin Medical University Cancer Institute and Hospital (3)
School of Food and Biological Engineering, Hefei University of Technology, Hefei, 230009, China (3)
Northwest University (3)
Zhejiang University (3)
Department of Laboratory Medicine, Ren Ji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai, China. (2)
college of pharmacy, Nankai university,Tianjin, 300353, China (2)
Professor and president of BGI Academy of Marine Sciences (2)
College of Agronomy, Jiangxi Agricultural University (2)
Beijing Key Laboratory of Maize DNA Fingerprinting and Molecular Breeding, Maize Research Center, Beijing Academy of Agriculture and Forestry Sciences (BAAFS), Beijing, 100097, China (2)
Department of Physiology & Biophysics, University of California, Irvine, Irvine, California, USA (2)
School of Pharmacy, UW-Madison (2)
Division of Nephrology, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology (2)
BCMP, Harvard Medical School, Boston, USA Cancer Biology, Dana-Farber Cancer Institute, Boston, USA (2)
Institute of Biochemistry, University of Kiel (2)
Shanghai Institute of Thoracic Oncology, Shanghai Chest Hospital, Shanghai Jiao Tong University, Shanghai 200030 (2)
Lab of Jie Zheng, Neuroscience Research Institute and Department of Neurobiology, School of Basic Medical Sciences, Peking University, Beijing 100083, P.R. China (2)
Ningbo University (2)
Ping Xu, Ph.D. Secretary General of CNHUPO Professor, Director Department of Genomics and Proteomics, State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing) Beijing Institute of Lifeomics， 38 Life Science Park Road, Beijing 102206, P.R. China. Tel: 0086-10-61777113, Fax: 0086-10-61777060 (2)
Hebei Medical University (2)
Tianjin Medical University General Hospital (2)

IsPrivate

False (3)

Submitter Keywords

Machine Learning Model (2)
FAIR-AIML (1)
Immuno-oncology (1)

Modification

N6 (1)
57.021464 (1)

Study type

Transcription profiling by array (110)
RNA-seq of coding RNA (72)
ChIP-seq (27)
RNA-seq of non coding RNA (16)
Comparative genomic hybridization by array (10)
Methylation profiling by high throughput sequencing (10)
Unknown experiment type (6)
Genotyping by array (6)
ChIP-chip by tiling array (5)
Transcription profiling by tiling array (4)
Other (4)
Transcription profiling by RT-PCR (3)
Animal - High-throughput sequencing (2)
ChIP-chip by array (2)
DNA-seq (2)
RNA-seq of coding RNA from single cells (2)
Cell line - Single-cell sequencing (1)
High-throughput sequencing (1)
RNAi profiling by array (1)

Release Date

2025 (5614)
2022 (5040)
2023 (4591)
2024 (4401)
2021 (3752)
2020 (2739)
2019 (1942)
2018 (1591)
2017 (1372)
2016 (1191)
2015 (923)
2026 (801)
2014 (698)
2013 (438)
2012 (345)
2011 (266)
2010 (219)
2009 (145)
2008 (93)
2007 (57)
2006 (49)
2005 (42)
2004 (31)
2003 (18)
2002 (11)
1998 (10)
2001 (9)
2000 (9)
1999 (6)
1997 (2)

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Two contrasting genotypes of Theobroma cacao differ in their transcriptional response and in accumulation of reactive oxygen species in response to treatment with salicylic acid

In order to identify variety-specific differences in defense response induction, Scavina 6 (Sca6) and Imperial College Selection 1 (ICS1) cacao plantlets were treated with 2mM SA or water as control and leaves of three developmental stages (A,C, E) were collected. This process was repeated 3 times y...

ORGANISM(S): Theobroma cacao

2015-03-31 | E-GEOD-64022 | biostudies-arrayexpress

The Role of SHI/STY/SRS Genes in Organ Growth and Carpel Development Is Conserved in the Distant Eudicot Species Arabidopsis thaliana and Nicotiana benthamiana.

Not available

S-EPMC5440560 | biostudies-literature

A comprehensive microsatellite landscape of human Y-DNA at kilobase resolution.

Not available

S-EPMC7821415 | biostudies-literature

Functional analysis of the heterotrimeric NF-Y transcription factor complex in cassava disease resistance.

Not available

S-EPMC6943695 | biostudies-literature

A worldwide survey of human male demographic history based on Y-SNP and Y-STR data from the HGDP-CEPH populations.