Shi Yu Y - OmicsDI

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Unknown (4165)
Proteomics (127)
Transcriptomics (27)
Metabolomics (21)
Genomics (8)

Organisms

Homo sapiens (62)
Methylocystis sp. (61)
Bothrops insularis (61)
Bothrops jararaca (61)
Bothrops jararacussu (61)
Bothrops cotiara (61)
Streptomyces coelicolor (61)
Burkholderia ubonensis MSMB22 (61)
Pseudomonas aeruginosa PA103 (61)
Artibeus jamaicensis (61)
Mus musculus (11)
Arabidopsis thaliana (7)
Rattus norvegicus (3)
Oryza sativa (2)
Mycolicibacterium smegmatis MC2 155 (2)
Brassica oleracea (1)
Macaca mulatta (1)
Cutibacterium acnes 6609 (1)
Pyricularia oryzae (1)
Streptomyces (1)
Vibrio parahaemolyticus RIMD 2210633 (1)
Pseudomonas aeruginosa PAO1 (1)
Severe acute respiratory syndrome coronavirus 2 (1)
Staphylococcus aureus (1)
Oryctolagus cuniculus (1)
Saccharomyces cerevisiae (1)
Rattus rattus (1)
Triticum aestivum (1)
Candida albicans (1)
cellular organisms (1)

Repository

iProX (64)
pride (61)
biostudies-arrayexpress (32)
MetaboLights (20)
EGA (3)
jPOST (2)
GNPS (1)

Tissue

Cell culture (19)
Epithelial cell (4)
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Liver (3)
Gastric adenocarcinoma cell (2)
Brain (2)
Stem cell (2)
Whole body (2)
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Leaf (2)
B cell (2)
Regulation of gastric acid secretion (1)
Sensory ganglion (1)
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T-cell acute lymphoblastic leukemia cell (1)
Preadipocyte (1)
Small intestine (1)
Glioblast (1)
Prostate gland (1)
Pancreas (1)
Esophagus (1)
Embryonic stem cell (1)
Shoot (1)
Plant cell (1)
Bone marrow (1)
Neuron (1)
Blood serum (1)
Bronchoalveolar lavage (1)
Cell suspension culture (1)

Disease

Acute leukemia (4)
Breast cancer (3)
Ovarian cancer (1)
Multidrug-resistant tuberculosis (1)
Neuropathic pain (1)
Eosinophilic esophagitis (1)
Diffuse gastric cancer (1)
Brain glioblastoma multiforme (1)
Gastric adenocarcinoma (1)
Cervix carcinoma (1)
Brain cancer (1)
Type 2 diabetes mellitus (1)
Disease free (1)

Technology Type

Mass Spectrometry (61)
Shotgun proteomics (24)
Bottom-up proteomics (17)
Mass spectrometry (16)
Gel-based experiment (6)
Affinity purification coupled with mass spectrometry proteomics (6)
Data-dependent acquisition (5)
Top-down proteomics (5)
Mass spectrometry assay (3)
SWATH MS (2)
SRM/MRM (2)
NMR spectroscopy (1)
Mass spectrometry imaging (1)
Data-independent acquisition (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (9)
Liquid Chromatography MS - positive - reverse phase (7)
6540 Q-TOF LC/MS (Agilent) (2)
Liquid Chromatography MS - negative (2)
Liquid Chromatography MS - positive (2)
Liquid Chromatography MS - negative - hilic (2)
Illumina Genome Analyzer II (1)
Illumina HiSeq 2000 (1)
LTQ FT (1)
MaXis (1)
Liquid Chromatography MS - alternating – hilic (1)
Flow injection analysis MS - (1)
Direct infusion MS - negative (1)
Nuclear Magnetic Resonance (NMR) - (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2025 (26)
2023 (24)
2022 (23)
2024 (15)
2021 (13)
2014 (12)
2026 (12)
2020 (10)
2015 (5)
2016 (4)
2013 (4)
2012 (4)
2010 (4)
2019 (3)
2017 (2)
2009 (1)
2007 (1)

CHEBI ID

CHEBI:17154 (9)
CHEBI:16704 (9)
CHEBI:17596 (9)
CHEBI:17533 (8)
CHEBI:17568 (8)
CHEBI:17509 (8)
CHEBI:15891 (8)
CHEBI:16040 (7)
CHEBI:17015 (7)
CHEBI:16335 (7)
CHEBI:17750 (7)
CHEBI:17859 (7)
CHEBI:28834 (7)
CHEBI:17405 (7)
CHEBI:48131 (7)
CHEBI:16027 (7)
CHEBI:16919 (7)
CHEBI:28865 (7)
CHEBI:15756 (7)
CHEBI:17351 (7)
CHEBI:17368 (7)
CHEBI:30769 (7)
CHEBI:16811 (6)
CHEBI:17802 (6)
CHEBI:15968 (6)
CHEBI:16750 (6)
CHEBI:16870 (6)
CHEBI:28875 (6)
CHEBI:30763 (6)
CHEBI:17620 (6)

Metabolite Name

Inosine (7)
Taurine (6)
Uridine (6)
Creatine (6)
Uracil (5)
Acetylcholine (5)
Melatonin (5)
Adenosine (5)
Guanine (5)
Cytosine (5)
Guanosine (5)
Creatinine (5)
L-Tyrosine (5)
Hypoxanthine (5)
Chrysin (4)
Leucine (4)
Betaine (4)
Genistein (4)
Carnosine (4)
L-Proline (4)
Pilocarpine (4)
Pantothenic acid (4)
Cortisol (4)
Nicotinamide (4)
Taurocholic acid (4)
Sebacic acid (4)
Salicylic acid (4)
N-Acetyl-L-phenylalanine (4)
Isoleucine (4)
Thymidine (4)

Study type

Transcription profiling by array (11)
RNA-seq of coding RNA (9)
ChIP-seq (3)
RNA-seq of non coding RNA (3)
ChIP-chip by array (2)
Methylation profiling by high throughput sequencing (2)
Comparative genomic hybridization by array (1)
Other (1)

Release Date

2025 (713)
2024 (581)
2022 (553)
2023 (494)
2021 (458)
2020 (308)
2019 (185)
2018 (185)
2017 (162)
2016 (131)
2026 (112)
2015 (109)
2014 (80)
2013 (37)
2012 (33)
2011 (20)
2010 (13)
2009 (10)
2007 (5)
2008 (4)
2004 (2)
2005 (1)
2000 (1)

Lab affiliation

Department of Structural Biology and Developmental Neurobiology, Center for Proteomics and Metabolomics, St. Jude Children's Research Hospital, Memphis, TN 38105, USA (3)
School of Food and Biological Engineering, Hefei University of Technology, Hefei, 230009, China (3)
Xiamen University (3)
Zhejiang University (3)
Department of Physiology & Biophysics, University of California, Irvine, Irvine, California, USA (2)
Shanghai Institute of Thoracic Oncology, Shanghai Chest Hospital, Shanghai Jiao Tong University, Shanghai 200030 (2)
Agronomy College, Henan Agricultural University, China (2)
westlake.edu.cn (2)
NMPA Key Laboratory for Research and Evaluation of Drug Metabolism & Guangdong Provincial Key Laboratory of New Drug Screening & Guangdong-Hongkong-Macao Joint Laboratory for New Drug Screening, School of Pharmaceutical Sciences, Southern Medical University,Guangzhou 510515, P.R.China (1)
Department of Biochemistry and Biophysics University of North Carolina Chapel Hill, NC USA (1)
School of pharmacy and department of chemistry, University of Wisconsin Madison (1)
Guangxi Disease Prevention and Control Center (1)
Biological mass spectrometry and proteomics group, Department of Chemistry High-resolution mass spectrometry platform, Core research facilities Guangdong provincial key laboratory for cell microenvironment and disease research Southern University of Science and Technology (SUSTech) 403, 1st research building, 1088 Xueyuan Rd., Nanshan, Shenzhen (1)
Department of Pediatrics Dr. von Hauner Children’s Hospital University Hospital LMU Munich Lindwurmstr. 4 80337 Munich, Germany (1)
MOE Key Laboratory of Gene Function and Regulation, State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou 510275, China (1)
Children's Hospital of Soochow University, Suzhou (1)
Ludwig-Maximilians-Universität München Protein Analysis Unit Molecular Biology Department Großhadernerstr. 9 82152 Planegg-Martinsried (1)
Divisions of Pulmonary Biology, Molecular Cardiovascular Biology and Developmental Biology Department of Pediatrics Cincinnati Children's Hospital Medical Center Cincinnati, OH 45229 (1)
peking university (1)
German Research Cancer Center (DKFZ), Heidelberg, Germany (1)
Hangzhou Medical College (1)
1. Precision Medicine Research Programme, Yong Loo Lin School of Medicine, National University of Singapore, Singapore. 2. Cardiovascular Disease Research Programme, Yong Loo Lin School of Medicine, National University of Singapore, Singapore. 3. Department of Biochemistry, Yong Loo Lin School of Medicine, National University of Singapore, Singapore. (1)
Shandong Provincial Hospital for Skin Diseases & Shandong Provincial Institute of Dermatology and Venereology, Shandong First Medical University & Shandong Academy of Medical Sciences (1)
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China (1)
Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences (1)
Department of Pharmacology, University of Colorado School of Medicine, Aurora, CO 80045, USA (1)
Hubei University (1)
Second hospital of Shanxi Medical University (1)
Hefei University of Technology (1)
Institute of Botany, Jiangsu Province and Chinese Academy of Sciences (1)

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Mechanisms of He Shi Yu Lin formula in treating premature ovarian insufficiency: insights from network pharmacology and animal experiments.

Not available

S-EPMC11674109 | biostudies-literature

Metabolomics Response to Drought Stress in Morus alba L. Variety Yu-711.

Not available

S-EPMC8400578 | biostudies-literature

Yi-Shen-Hua-Shi Granule Alleviates Adriamycin-Induced Glomerular Fibrosis by Suppressing the BMP2/Smad Signaling Pathway.

Not available

S-EPMC9240271 | biostudies-literature

Early Cretaceous Keteleerioxylon Wood in the Songliao Basin, Northeast China, and Its Geographic and Environmental Implications.

Not available

S-EPMC9687590 | biostudies-literature

Mechanism of interventional effect and targets of Zhuyu Pill in regulating and suppressing colitis and cholestasis

Zhuyu pill (ZYP) is a traditional Chinese medicine prescription composed of two drugs, Coptis chinensis Franch. and Tetradium ruticarpum (A. Jussieu) T. G. Hartley, and is commonly used in the clinical treatment of diseases of the digestive system. However, the mechanism underly...

2022-11-02 | MTBLS4980 | MetaboLights

Network Pharmacology Prediction and Molecular Docking-Based Strategy to Discover the Potential Pharmacological Mechanism of Wen-Yu-Jin against Pulmonary Fibrosis in a Mouse Model.

Not available

S-EPMC8853792 | biostudies-literature

TMT-based proteome and phosphoproteome profiling of control and GPR146 knockdown SGBS cells

This dataset contains quantitative proteome and phosphoproteome profiles of control and GPR146 knockdown SGBS human preadipocyte cells. Cells were processed for tandem mass tag (TMT)–based multiplexed quantitative mass spectrometry, with parallel analysis of total proteome input samples and TiO2-enr...

ORGANISM(S): Homo sapiens (Human)

2026-02-19 | PXD074087 | Pride

Flavonoid Biosynthesis Is Likely More Susceptible to Elevation and Tree Age Than Other Branch Pathways Involved in Phenylpropanoid Biosynthesis in Ginkgo Leaves

Ginkgo leaves are always resources for flavonoids pharmaceutical industry. However, the effect of the elevation and tree age changes on flavonoid biosynthesis have not been detailly explored in Ginkgo leaves. In addition, whether these environmental pressures have similar effects on the biosynthesis...

2020-12-14 | MTBLS962 | MetaboLights

Tet and TDG Mediate DNA Demethylation Essential for MET in Somatic Cell Reprogramming

Tet-mediated DNA oxidation is a new type of epigenetic modification in mammals and its role in the regulation of cell fate transition remains poorly understood. Here, we derive mouse embryonic fibroblasts (MEFs) deleted in all three Tet genes and examine their capability to be reprogrammed into iPS ...

ORGANISM(S): Mus musculus

2014-02-19 | E-GEOD-52741 | biostudies-arrayexpress

Identification and analysis of the tegumental protein and excretory-secretory products of the carcinogenic liver fluke Clonorchis sinensis

The adult C. sinensis 6h culture supernatants containing the ES were harvested and concentrated. The tegument isolated using a freeze/thaw method, extraction with succession extracted buffers. The outer surface proteins of C. sinensis were labeled with biotin, and the biotinylated proteins were puri...

ORGANISM(S): Clonorchis sinensis Rattus norvegicus (Rat)

2021-09-09 | PXD019116 | Pride

C. sinensis proteomics tegument biotinylation cholangiocarcinoma

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