Shin A A - OmicsDI

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Unknown (15340)
Transcriptomics (272)
Proteomics (228)
Genomics (78)
Models (9)
Genomic (8)
Metabolomics (7)
Other (1)
Multiomics (1)

Organisms

Homo sapiens (264)
Mus musculus (134)
Caenorhabditis elegans (27)
Arabidopsis thaliana (12)
Rattus norvegicus (10)
Saccharomyces cerevisiae (6)
Capsicum annuum (4)
Oryza sativa (4)
Xenopus laevis (3)
Aedes aegypti (2)
Glycine max (2)
Drosophila melanogaster (2)
Danio rerio (2)
Chlamydomonas reinhardtii (2)
Macaca fascicularis (2)
Cardamine sp. SIM-2007 (1)
rat gut metagenome (1)
Burkholderia glumae BGR1 (1)
Acinetobacter baumannii ATCC 17978 (1)
Nannochloropsis oceanica (1)
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Callithrix jacchus (1)
Oryza sativa Indica Group (1)
Cricetulus griseus (1)

Organisms

Mus musculus (6)
Sporobolus virginicus (1)
Macaca fascicularis (1)
Ovis aries (1)
Rattus norvegicus (1)
Homo sapiens (1)

Repository

biostudies-arrayexpress (313)
pride (152)
EGA (25)
jPOST (25)
PAXDB (23)
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ENA (12)
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dbGaP (8)
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geo (4)
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PeptideAtlas (2)
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iProX (1)

Tissue

Cell culture (50)
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Leaf (4)
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Heart (2)
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Adipocyte cell line (1)
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WEHI-231 cell (1)

Disease

Colon cancer (5)
Breast cancer (4)
Disease free (4)
Parkinson's disease (3)
Alzheimer's disease (2)
Brain cancer (2)
Cervix carcinoma (2)
Hepatocellular carcinoma (2)
Lung cancer (2)
Type 2 diabetes mellitus (2)
Neuroblastoma-undifferentiated (1)
Not Available (1)
Acute leukemia (1)
Acute myeloid leukemia (1)
Bacterial infectious disease (1)
COVID-19 (1)
Cardiovascular system disease (1)
Crohn's colitis (1)
Dementia (1)
Demyelinating disease (1)
Diabetes mellitus (1)
Mental depression (1)
Multiple sclerosis (1)
Neurodegenerative disease (1)
Pancreatic intraductal papillary-mucinous neoplasm (1)
Salmonellosis (1)
Toxic encephalopathy (1)
Viral infectious disease (1)

Technology Type

Mass Spectrometry (152)
Shotgun proteomics (93)
Bottom-up proteomics (26)
Data-dependent acquisition (20)
Affinity purification coupled with mass spectrometry proteomics (17)
Gel-based experiment (12)
Mass spectrometry (7)
Top-down proteomics (3)
All-ion fragmentation (2)
Data-independent acquisition (2)
DiaPASEF (2)
SWATH MS (2)
Illumina 610K Quad, Illumina 1.2M (1)
Illumina HiSeq 2000, Illumina_2.5M (1)
Illumina OmniQuad 2.5 - CNVpartition (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Glycoproteomics (1)
HDMSE (1)

Instrument Platform

Illumina HiSeq 2500 (6)
Illumina NovaSeq 6000 (4)
Illumina HiSeq 2000 (3)
LTQ Orbitrap (3)
LTQ Orbitrap Elite (3)
Orbitrap Fusion (3)
Orbitrap Fusion Lumos (3)
Q Exactive (3)
Illumina MiSeq (2)
NextSeq 500 (2)
6520A Quadrupole Time-of-Flight LC/MS (2)
Orbitrap Exploris 480 (2)
TripleTOF 6600 (2)
LTQ Orbitrap Velos (2)
Gas Chromatography MS - Positive (GC-MS (Positive)) (2)
BSL2 Laboratory (1)
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Nanodrop (1)
Illumina HiSeq 1500 (1)
Instrument (1)
LTQ Orbitrap Velos Pro (1)
LTQ Orbitrap XL (1)
Thermo Orbitrap Elite mass spectrometer (1)
Thermo Trace 1310 GC-MS with ISQ LT (single quadrupole) (1)
TripleTOF 5600 (1)
Flow injection analysis MS - negative (1)
Flow injection analysis MS - positive (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2011 (58)
2015 (56)
2020 (44)
2021 (44)
2014 (41)
2010 (41)
2013 (38)
2012 (33)
2023 (32)
2025 (28)
2026 (26)
2008 (24)
2024 (20)
2016 (14)
2022 (13)
2019 (12)
2018 (10)
2007 (7)
2009 (6)
2005 (3)
2006 (2)
2004 (2)
2017 (2)

UNIPROT ID/AC

1433B_HUMAN (17)
1433E_HUMAN (17)
1433F_HUMAN (17)
1433G_HUMAN (17)
1433S_HUMAN (17)
1433T_HUMAN (17)
1433Z_HUMAN (17)
2A5A_HUMAN (17)
2A5D_HUMAN (17)
2A5E_HUMAN (17)
2A5G_HUMAN (17)
2AAA_HUMAN (17)
2ABA_HUMAN (17)
2ABD_HUMAN (17)
3BHS2_HUMAN (17)
3BP1_HUMAN (17)
3BP5L_HUMAN (17)
3HAO_HUMAN (17)
3HIDH_HUMAN (17)
3MG_HUMAN (17)
41_HUMAN (17)
4ET_HUMAN (17)
4F2_HUMAN (17)
5NT3A_HUMAN (17)
5NTC_HUMAN (17)
5NTD_HUMAN (17)
6PGD_HUMAN (17)
P04049 (2)
P27361 (2)
Q02750 (1)

ENSEMBL ID

ENSMUSG00000021039 (1)
ENSMUSG00000027651 (1)
ENSMUSG00000098557 (1)
ENSMUSP00000069525 (1)
ENSMUSP00000140201 (1)
ENSMUSP00000141097 (1)
ENSMUSP00000141637 (1)

CHEBI ID

CHEBI:30769 (4)
CHEBI:32816 (4)
CHEBI:15741 (3)
CHEBI:15756 (3)
CHEBI:16865 (3)
CHEBI:17368 (3)
CHEBI:17568 (3)
CHEBI:17596 (3)
CHEBI:17992 (3)
CHEBI:18183 (3)
CHEBI:33508 (3)
CHEBI:6650 (3)
CHEBI:15318 (2)
CHEBI:15428 (2)
CHEBI:15603 (2)
CHEBI:15725 (2)
CHEBI:15940 (2)
CHEBI:15971 (2)
CHEBI:15978 (2)
CHEBI:16015 (2)
CHEBI:16027 (2)
CHEBI:16108 (2)
CHEBI:16199 (2)
CHEBI:16235 (2)
CHEBI:16414 (2)
CHEBI:16467 (2)
CHEBI:16643 (2)
CHEBI:16695 (2)
CHEBI:33699 (1)
CHEBI:86989 (1)

Metabolite Name

Hypoxanthine (3)
Palmitic acid (3)
Sucrose (3)
Adenosine monophosphate (2)
Asparagine (2)
Citric acid (2)
D-Glucose (2)
D-Ribose (2)
Fructose (2)
Glycerol (2)
Glycolic acid (2)
Guanine (2)
Inosine (2)
Isoleucine (2)
L-Cysteine (2)
L-Histidine (2)
L-Isoleucine (2)
L-Leucine (2)
L-Lysine (2)
L-Malic acid (2)
L-Methionine (2)
L-Phenylalanine (2)
L-Proline (2)
L-Serine (2)
L-Threonine (2)
L-Tryptophan (2)
L-Tyrosine (2)
Leucine (2)
Malic acid (2)
Melibiose (2)

First Public Date

2014 (4)
2024 (2)
2015 (2)
2025 (1)
2023 (1)
2021 (1)
2020 (1)

Modelling Approach

Ordinary differential equation model (6)
Constraint-based model (3)

Lab affiliation

Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (13)
Proteomics core facility, Biomedical Research Institute, Seoul National University Hospital (5)
Department of Convergence Medicine, Convergence Medicine Research Center/Biomedical Research Center, Asan Medical Center, Asan Institute for Life Sciences, University of Ulsan College of Medicine, 88 Olympic-ro 43-gil, Songpa-gu, Seoul 05505, Republic of Korea. (4)
Oregon Hearing Research Center Oregon Health & Science University Portland, OR, USA (4)
Cancer Research Center of Toulouse, INSERM UMR 1037, 31037 Toulouse, France Université Toulouse III Paul Sabatier, 31330 Toulouse, France (2)
Center for Natural Product Systems Biology, Korea Institute of Science and Technology (2)
Center for Theragnosis, Korea Institute of Science and Technology, Seoul, Korea (2)
EPFL (2)
Korea Institute of Science and Technology (2)
Oregon Hearing Research Center (2)
Seoul National University (2)
Yonsei Proteome Research Center (2)
Amgen Inc. (1)
Asan Medical Center, Clinical Proteomics Core, Republic of Korea (1)
Assistant Professor of Biochemistry, Biophysics and Structural Biology Molecular and Cell Biology Department University of California at Berkeley Li Ka Shing Center, room 300A Berkeley, CA 94720 rzoncu@berkeley.edu (1)
Assistant professor, School of Biological Sciences, Seoul National University. (1)
Associate Professor Stephen F. and Fay Evans Martin Endowed Professorship in Chemistry CPRIT Scholar Department of Chemistry University of Texas at Austin (1)
Associate Professor, Department of Laboratory Mediciene, UCSF (1)
BOKU University, Vienna, Austria (1)
Basic Research Lab for “Epigenetic Regeneration of Aged Skeleto-Muscular System (ERASMUS)”, Department of Molecular Genetics and Dental Pharmacology, School of Dentistry, Dental Research Institute, Seoul National University, Seoul, South Korea (1)
Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (1)
Biomedical Omics Research, Korea Basic Science Institute, Cheongju, Korea (1)
CEA, CNRS, Aix-Marseille University, Institute of Biosciences and Biotechnologies of Aix-Marseille (BIAM), UMR7265, CEA Cadarache, 13108 Saint-Paul-lez-Durance, France (1)
Cancer Program, Department of Biochemistry and Molecular Biology, Biomedicine Discovery Institute, Monash University, Melbourne, VIC, 3800, Australia (1)
Cancer Program, Monash Biomedicine Discovery Institute and Department of Biochemistry and Molecular Biology, Monash University, Melbourne, Victoria 3800, Australia. (1)
Cancer Program, Monash Biomedicine Discovery Institute, Clayton, VIC 3800, Australia. Department of Biochemistry and Molecular Biology, Monash University, Melbourne, VIC 3800, Australia. (1)
Center for Plant Aging Research, Institute for Basic Science, and Department of New Biology, Daegu Gyeongbuk Institute of Science and Technology, Daegu 42988, Republic of Korea (1)
Center for RNA Research, Institute for Basic Science, Seoul 08826, Korea School of Biological Sciences, Seoul National University, Seoul 08826, Korea (1)
Center for RNA Research, Institute for Basic Science, Seoul National University (1)
Center for theragnosis, Korea Institute of Science and Technology (1)

IsPrivate

False (9)

Model Flag

Non Kinetic (3)

Modification

2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (183)
ChIP-seq (34)
RNA-seq of coding RNA (34)
Methylation profiling by array (10)
RNA-seq of non coding RNA (9)
ChIP-chip by tiling array (8)
Comparative genomic hybridization by array (6)
DNA-seq (5)
Unknown experiment type (4)
Proteomic profiling by array (4)
Genotyping by array (3)
Transcription profiling by RT-PCR (2)
Other (2)
RNA-seq of total RNA (2)
Transcription profiling by MPSS (1)
Transcription profiling by SAGE (1)
Cell line - Single-cell sequencing (1)
Human - Single-cell sequencing (1)
ATAC-seq (1)
MicroRNA profiling by array (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2022 (1788)
2023 (1727)
2025 (1655)
2021 (1621)
2024 (1503)
2020 (1369)
2019 (1038)
2018 (890)
2017 (760)
2016 (681)
2015 (571)
2014 (483)
2013 (288)
2012 (272)
2026 (240)
2011 (212)
2010 (177)
2008 (103)
2009 (83)
2007 (53)
2006 (37)
2005 (34)
2004 (21)
2003 (11)
2002 (11)
2000 (8)
2001 (7)
1999 (4)
1998 (3)

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A universal polymer shell-isolated nanoparticle (SHIN) design for single particle spectro-electrochemical SERS sensing using different core shapes.

Not available

S-EPMC9416900 | biostudies-literature

Genome-Wide Association Study for Screening and Identifying Potential Shin Color Loci in Ducks.

Not available

S-EPMC9407491 | biostudies-literature

Galactokinase 1 acts as a protein kinase for TIMM13, regulating mitochondrial respiration

Emerging evidence demonstrates that some monosaccharide kinases (HK2 for glucose and KHK-A for fructose) act as protein kinases to regulate cell signaling pathways and gene expressions. GALK1 is a metabolic kinase for the third monosaccharide galactose. We here checked the possibility that GALK1 pla...

ORGANISM(S): Homo sapiens (Human)

2026-10-05 | PXD075859 | Pride

Galk1 phosphorylates timm13 to regulate cellular respiration

Transcription profiling of C. kokaiensis CL, INT, and CH flowers on an Arabidopsis array

The annual cleistogamous herb Cardamine kokaiensis is an endemic plant along the Kokai River in Japan. We examined the differences in gene expression patterns among cleistogamous (CL), intermediate (INT), and chasmogamous (CH) flower by cross-species microarray analysis using an Arabidopsis thaliana...

ORGANISM(S): Cardamine sp. SIM-2007

2008-06-18 | E-GEOD-9799 | biostudies-arrayexpress

Efficacy, Safety and Tolerability of Pyronaridine-artesunate in Asymptomatic Malaria-infected Individuals: a Randomized Controlled Trial.

Not available

S-EPMC8800175 | biostudies-literature

Protective Effects of Angiotensin Receptor Blockers on the Incidence of Dementia in Patients with Chronic Kidney Disease: A Population-Based Nationwide Study.

Not available

S-EPMC8585022 | biostudies-literature

Effects of detraining and retraining on muscle energy-sensing network and meteorin-like levels in obese mice.

Not available

S-EPMC5924483 | biostudies-literature

Association of vascular access flow with short-term and long-term mortality in chronic haemodialysis patients: a retrospective cohort study.