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TranscriptomicsSingle Cell based genomewide gene expression analysis of murine bone-marrow derived Very Small Embryonic-Like Stem Cells (VSELs)
Recently, we identified a population of Oct4+Sca-1+Lin-CD45- very small embryonic-like stem-cells (VSELs) in adult tissues. Open chromatin structure of pluripotency genes and genomic imprinting-related epigenetic mechanisms maintain pluripotency and quiescence of VSELs, respectively. However, global...
ORGANISM(S): Mus musculus 
2011-12-21 | E-GEOD-29281 | biostudies-arrayexpress
TranscriptomicsExpression profiling of BORIS knockout mice testis
To identify differentially expressed genes in Boris KO testis, gene expression profilings were performed with NIAID mouse customized arrays. Gene expressions of five biological replicates of Boris KO testis were compared to those of wild type testis. Total RNAs from WT and BORIS KO testes prepared f...
ORGANISM(S): Mus musculus 
2010-06-05 | E-GEOD-19162 | biostudies-arrayexpress
TranscriptomicsExpression profiling of mouse B1a cells with high expression of PC1 vs. those with low expression of PC1.
Mouse peritoneal B1a cells were classified into two groups based upon the expression level of PC1. One is PC1 high group and the other is PC1 low. To evaluate gene expression patterns that distinguished PC1 high expressing B1a cells from PC1 low expressing B1a cells, we used Affymetrix GeneChipM-BM-...
ORGANISM(S): Mus musculus 
2012-07-08 | E-GEOD-39171 | biostudies-arrayexpress
UnknownGlechoma hederacea Suppresses RANKL-mediated Osteoclastogenesis.
Not available
S-EPMC4293732 | biostudies-literature
TranscriptomicsDehydration impaired normal renal development in infant mice
The kidney is a major organ in which fluid balance and waste excretion is regulated. To obtain mature functions of the kidney, normal renal developmental processes need to be preceded. Comprehensive genetic programs underlying renal development during prenatal life have been widely studied. However,...
ORGANISM(S): Mus musculus 
2016-07-01 | E-GEOD-75604 | biostudies-arrayexpress
TranscriptomicsChip-chip from mouse diffuse large B cell lymphoma cell lines with IRF8
IRF8, a transcriptional factor, has the heightened expression in germinal center(GC) B cell and GC-origin B cell lymphoma. To identify IRF8 direct targets in GC B cells, ChIP-chip ananlysis was done in three different GC-origin diffuse large B cell lymphoma cell lines. IRF8-negative cell lines, MPC1...
ORGANISM(S): Mus musculus 
2011-10-14 | E-GEOD-30519 | biostudies-arrayexpress
TranscriptomicsChip-chip from mouse diffuse large B cell lymphoma cell lines with PU.1
PU.1, a transcriptional factor, is expressed in wide range of B cells from early to mature stage. To identify PU.1 direct targets in germinal center B cells, ChIP-chip ananlysis was done in three different GC-origin diffuse large B cell lymphoma cell lines. PU.1 ChIP in two different cell lines (NFS...
ORGANISM(S): Mus musculus 
2011-10-14 | E-GEOD-30520 | biostudies-arrayexpress
TranscriptomicsChip-chip from human diffuse large B cell lymphoma cell lines with IRF8
IRF8, a transcriptional factor, has the heightened expression in germinal center(GC) B cell and GC-origin B cell lymphoma. To identify IRF8 direct targets in GC B cells, ChIP-chip ananlysis was done in three different GC-origin diffuse large B cell lymphoma cell lines. IRF8-negative cell lines, MMS1...
ORGANISM(S): Homo sapiens 
2011-10-14 | E-GEOD-30357 | biostudies-arrayexpress
TranscriptomicsWhole transcriptome analyses of three Berkshire and three Korean native pig fat, liver and muscle tissue using RNA-Seq
We sequenced the whole mRNA of six pig (Sus scrofa) fat, liver and muscle tissues, generating a total of 1.3 billion short reads with 90-bp pair-end sequences from 24 samples. Comparing with current genome annotation, we identified 32,361 unigene clusters spanning 51.83 Mb that contained 11,933 (36....
ORGANISM(S): Sus scrofa 
2014-09-01 | E-GEOD-45204 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of FACS sorted mouse calvarial osteroblasts at defined differentiation stages to identify genes highly associated with osteoblast differentiation
This study compares a comprehensive microarray analysis of unsorted mCOB cultures at two level of cell differentiation with cells that are more homogeneous for a level of cellular differentiation. It demonstrates the loss of information and in some cases misinformation that occurs when a heterogeneo...
ORGANISM(S): Mus musculus 
2007-08-31 | E-GEOD-2332 | biostudies-arrayexpress
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