Shinoda M M - OmicsDI

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Unknown (275)
Proteomics (8)
Transcriptomics (3)
Genomics (1)
Metabolomics (1)

Organisms

Mus musculus (4)
Homo sapiens (2)
Drosophila melanogaster (2)
Acidithiobacillaceae (1)
Cellulomonas fimi (1)
Cellulomonas sp. B6 (1)
Escherichia coli (1)

Repository

pride (5)
biostudies-arrayexpress (4)
jPOST (2)
MassIVE (1)
MetaboLights (1)

Tissue

Beige adipocyte (1)
Blood plasma (1)
Cell culture (1)

Disease

Crohn's disease (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass Spectrometry (5)
Shotgun proteomics (3)
Mass spectrometry (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Bottom-up proteomics (1)
Data-dependent acquisition (1)

Instrument Platform

Illumina HiSeq 2500 (1)
Q Exactive (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2023 (3)
2015 (2)
2019 (2)
2016 (1)
2013 (1)
2012 (1)
2024 (1)
2025 (1)
2021 (1)

CHEBI ID

CHEBI:10026 (1)
CHEBI:10028 (1)
CHEBI:10110 (1)
CHEBI:10225 (1)
CHEBI:10284 (1)
CHEBI:10454 (1)
CHEBI:1060 (1)
CHEBI:124938 (1)
CHEBI:125584 (1)
CHEBI:132703 (1)
CHEBI:132883 (1)
CHEBI:132991 (1)
CHEBI:133094 (1)
CHEBI:133325 (1)
CHEBI:133875 (1)
CHEBI:134473 (1)
CHEBI:134509 (1)
CHEBI:134511 (1)
CHEBI:135144 (1)
CHEBI:135351 (1)
CHEBI:135731 (1)
CHEBI:136554 (1)
CHEBI:136713 (1)
CHEBI:136803 (1)
CHEBI:136828 (1)
CHEBI:136941 (1)
CHEBI:137126 (1)
CHEBI:137132 (1)
CHEBI:137769 (1)
CHEBI:137773 (1)

Metabolite Name

(+)-12-hydroxy-9Z-hexadecenoic acid (1)
(+)-15,16-Dihydroxyoctadecanoic acid (1)
(+)-2-Sterpurene-6-ol (1)
(+)-Bicyclohumulenone (1)
(+)-delta-Cuprenen-4alpha-ol (1)
(-)-Malyngolide (1)
(10S)-Juvenile hormone III acid diol (1)
(10S)-Juvenile hormone III diol (1)
(13R,14R)-8-Labdene-13,14,15-triol (1)
(1R,2R)-3-oxo-2-pentyl-cyclopentanehexanoic acid (1)
(1S,2S)-3-oxo-2-pentyl-cyclopentanebutanoic acid (1)
(1S,2S)-3-oxo-2-pentyl-cyclopentanehexanoic acid (1)
(1S,2S)-3-oxo-2-pentyl-cyclopentaneoctanoic acid (1)
(23S)-3alpha,7alpha,23-Trihydroxy-5beta-cholan-24-oic Acid (1)
(23S)-methylcholic acid (1)
(25S)-5alpha-cholestan-3beta,6alpha,7beta,8beta,15alpha,16beta,26-heptol (1)
(2R,3S)-Piscidic acid (1)
(2S,2'S)-Pyrosaccharopine (1)
(2S,4S)-Pinnatanine (1)
(3S,5S)-Carbapenam-3-carboxylic acid (1)
(3beta,5alpha,9alpha,14alpha,22E,24R)-3,5,9,14-Tetrahydroxyergosta-7,22-dien-6-one (1)
(3beta,5alpha,9alpha,22E,24R)-3,5,9-Trihydroxy-23-methylergosta-7,22-dien-6-one (1)
(3beta,9beta)-7-Drimene-3,11,12-triol (1)
(9S,10S)-10-hydroxy-9-(phosphonooxy)octadecanoate (1)
(9S,13S)-10,11-dihydro-12-oxo-15-phytoenoic acid (1)
(9xi,10xi,12xi)-9,10-Dihydroxy-12-octadecenoic acid (1)
(R)-3-hydroxybutyrylcarnitine (1)
(S)-14-Methylhexadecanoic acid (1)
(S)-5'-Deoxy-5'-(methylsulfinyl)adenosine (1)
(S)-Codamine (1)

Study type

Transcription profiling by array (2)
ChIP-seq (1)
RNA-seq of coding RNA (1)

Release Date

2025 (38)
2021 (28)
2022 (26)
2023 (25)
2020 (24)
2019 (22)
2024 (20)
2016 (17)
2018 (13)
2014 (13)
2015 (11)
2017 (10)
2026 (8)
2013 (4)
2012 (4)
2007 (3)
2011 (2)
2010 (2)
2006 (2)
2001 (2)
2000 (2)
2009 (1)
2005 (1)
2002 (1)

Lab affiliation

Department of Molecular Biology and Genetics, Lab of Proteome Research, Federal Research and Clinical Centre of Physical-Chemical Medicine, Malaya Pirogovskaya 1a, Moscow, 119992, Russia (2)
Centro Científico y Tecnológico de Excelencia Ciencia & Vida, Fundación Ciencia & Vida, Santiago, Chile. Instituto Milenio de Oceanografía (IMO), Universidad de Concepción, Concepción, Chile. (1)
Diabetes, Endocrinology and Metabolism at Beth Israel Deaconess Medical Center and Harvard Medical School. Howard Hughes Medical Institute. Boston, MA, 02115 (1)
Instituto de Agrobiotecnología y Biología Molecular (IABIMO), Instituto Nacional de Tecnología Agropecuaria (INTA), Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), De los Reseros y N. Repetto s/n, Hurlingham B1686IGC, Buenos Aires, Argentina. (1)

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Mouse adipocyte phosphoproteome during differentiation

Kosaku Shinoda, Kana Ohyama, Yutaka Hasegawa, Hsin-Yi Chang, David W. Scheel, Louis Z. Sharp, Haemin Hong, Takashi Hosono, Mayu Ogura, Ayaka Sato, Yasushi Ishihama, and Shingo Kajimura. Phosphoproteomics Identifies CK2 As a Negative Regulator of Beige Adipocyte Thermogenesis and Energy Expenditure. ...

ORGANISM(S): Mus Musculus (ncbitaxon:10090)

2015-08-28 | MSV000079278 | MassIVE

Detection of Mycobacterium ulcerans by real-time PCR with improved primers.

Not available

S-EPMC5009631 | biostudies-literature

Widespread discordance between mRNA expression, protein abundance and <i>de novo</i> lipogenesis activity in hepatocytes during the fed-starvation transition.

Not available

S-EPMC12080948 | biostudies-literature

Molecular analysis of Malassezia microflora on the skin of atopic dermatitis patients and healthy subjects.

Not available

S-EPMC88376 | biostudies-literature

Molecular characterization of supraclavicular and subcutaneous abdominal adipose tissue samples collected during CE (cold exposure) and TN (thermoneutral) conditions

Recent studies suggest that brown adipose tissue (BAT) plays a role in energy and glucose metabolism in humans. However, the physiological significance of human BAT in lipid metabolism remains unknown. To gain insight regarding the mechanisms of accelerated lipid metabolism in relation to the cold-a...

ORGANISM(S): Homo sapiens

2016-05-26 | E-MTAB-4031 | biostudies-arrayexpress

Genome-wide Identification of Tebufenozide Resistant Genes in the smaller tea tortrix, Adoxophyes honmai (Lepidoptera: Tortricidae).

Not available

S-EPMC6414682 | biostudies-literature

Online gaming reduces psychological distress in a patient with schizophrenia: A case report.

Not available

S-EPMC11417111 | biostudies-literature

Impaired differentiation of macrophage lineage cells attenuates bone remodeling and inflammatory angiogenesis in Ndrg1 deficient mice.

Not available

S-EPMC4726041 | biostudies-literature

Development of a novel anti-erythropoietin-producing hepatocellular receptor B6 monoclonal antibody Eb<sub>6</sub>Mab-3 for flow cytometry.