Shotgun-proteomics

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Proteomics (21682)
Unknown (976)
Genomics (65)
Transcriptomics (47)
Other (16)
Metabolomics (6)
Multiomics (1)

Organisms

Homo sapiens (67)
Mus musculus (14)
Burkholderia cenocepacia H111 (4)
Bacteria (3)
Bacteroides cellulosilyticus (2)
Dorea longicatena DSM 13814 (2)
Bartonella henselae (2)
Streptomyces coelicolor (2)
Saccharomyces cerevisiae (2)
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 (2)
Caenorhabditis elegans (2)
Larimichthys crocea (1)
Bombyx mori (1)
Solanum lycopersicum (1)
Arabidopsis thaliana (1)
Bacteroides sp. WH2 (1)
Thomasclavelia spiroformis DSM 1552 (1)
Faecalibacterium prausnitzii M21/2 (1)
[Clostridium] scindens ATCC 35704 (1)
[Ruminococcus] torques ATCC 27756 (1)
Blautia obeum ATCC 29174 (1)
Phocaeicola vulgatus ATCC 8482 (1)
Bacteroides uniformis ATCC 8492 (1)
Bacteroides ovatus ATCC 8483 (1)
Agathobacter rectalis ATCC 33656 (1)
Collinsella aerofaciens ATCC 25986 (1)
Bacteroides caccae ATCC 43185 (1)
Parabacteroides distasonis ATCC 8503 (1)
Legionella pneumophila str. Paris (1)
Lactiplantibacillus plantarum WCFS1 (1)

Organisms

Homo sapiens (14)
Mus musculus (6)
Burkholderia cenocepacia H111 (2)
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 (2)
Caenorhabditis elegans (2)
Legionella pneumophila str. Paris (1)
Ophrys (1)
Lactiplantibacillus plantarum WCFS1 (1)
Spirodela polyrhiza (1)
Caballeronia glathei (1)
Haliotis rufescens (1)
Toxoplasma gondii VEG (1)
572307 (1)
Streptomyces coelicolor (1)
Erythranthe guttata (1)
Bartonella henselae (1)
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 (1)
Schmidtea mediterranea (1)
Bacteria (1)
Bacillus subtilis subsp. subtilis str. 168 (1)
Arabidopsis thaliana (1)

Repository

pride (21395)
MassIVE (163)
ENA (57)
geo (32)
jPOST (32)
PAXDB (30)
iProX (26)
biostudies-arrayexpress (21)
PeptideAtlas (21)
GPMDB (15)
PanoramaPublic (14)
GNPS (3)
MetaboLights (3)
EGA (2)
ExpressionAtlas (1)
NODE (1)

Tissue

Cell culture (4241)
Epithelial cell (1283)
Brain (1221)
Liver (715)
Permanent cell line cell (661)
Plant cell (596)
Leaf (543)
Blood plasma (542)
Blood (485)
Kidney (451)
Heart (439)
Fibroblast (436)
Lung (412)
Whole body (403)
Cell suspension culture (339)
T cell (326)
Colon (295)
Macrophage (288)
Blood cell (287)
Blood serum (276)
B cell (243)
Root (243)
Hepatocyte (242)
Skin (242)
Stem cell (215)
Embryo (203)
Primary cell (202)
Others (10)
Breast (1)
Urine (1)

Disease

Disease free (531)
Breast cancer (485)
Colon cancer (300)
Acute leukemia (231)
Cardiovascular system disease (146)
Alzheimer's disease (144)
Cervix carcinoma (144)
Malignant neoplasm of ovary (117)
Wounds and Injuries (100)
Melanoma (99)
Parkinson's disease (92)
Prostate adenocarcinoma (87)
Brain cancer (86)
Lymphoma (78)
Type 2 diabetes mellitus (78)
COVID-19 (73)
Lung cancer (70)
Glioblastoma (62)
Brain glioblastoma multiforme (59)
Neuroblastoma (57)
Non-small cell lung carcinoma (57)
Amyotrophic lateral sclerosis (49)
Hepatocellular carcinoma (48)
Plasmodium falciparum malaria (44)
Influenza (41)
Pancreatic cancer (40)
Pancreatic ductal adenocarcinoma (40)
Tuberculosis (40)
Severe acute respiratory syndrome (38)
Not Available (15)

Technology Type

Mass Spectrometry (21395)
Shotgun proteomics (21068)
Affinity purification coupled with mass spectrometry proteomics (1148)
Gel-based experiment (702)
SWATH MS (352)
Bottom-up proteomics (242)
SRM/MRM (181)
Top-down proteomics (136)
Data-dependent acquisition (125)
Chemical cross-linking coupled with mass spectrometry proteomics (113)
HDMSE (90)
All-ion fragmentation (58)
MSE (29)
Data-independent acquisition (25)
Mass spectrometry imaging (19)
Affinity proteomics (3)
PAcIFIC (3)
Mass spectrometry (2)
RNA mass spectrometry (2)
Mass spectrometry assay (1)
Gel-free quantification method (1)
Glycoproteomics (1)
Immunopeptidomics (1)
Metaproteomics (1)
Proteogenomics (1)
Sodium dodecyl sulfate polyacrylamide gel electrophoresis (1)

Instrument Platform

Q Exactive (40)
LTQ Orbitrap Velos (16)
Instrument (15)
LTQ (15)
LTQ Orbitrap Elite (14)
Orbitrap Fusion (10)
Q Exactive HF (10)
TimsTOF Pro (10)
LTQ Orbitrap (6)
Impact II (5)
Orbitrap Eclipse (5)
LTQ Velos (4)
Orbitrap Fusion Lumos (4)
Q Exactive Plus (4)
LTQ XL (3)
LTQ Orbitrap XL (3)
Q Exactive HF-X (3)
TripleTOF 6600 (3)
MaXis (2)
NLC-ESI-LTQ-Orbitrap mass analyser (2)
Orbitrap Exploris 480 (2)
Q-Exactive (Thermo Fisher) (2)
TimsTOF fleX (2)
Affymetrix Gene Atlas System (1)
Illumina Genome Analyzer II (1)
Illumina HiSeq 2500 (1)
6495C Triple Quadrupole LC/MS (1)
Q-Exactive Orbitrap (1)
6520A Quadrupole Time-of-Flight LC/MS (1)
ACQUITY UPLC (1)

Publication Date

2022 (3628)
2023 (3307)
2021 (3015)
2020 (2215)
2024 (1933)
2019 (1917)
2018 (1677)
2017 (1058)
2016 (939)
2025 (856)
2015 (580)
2014 (267)
2026 (221)
2013 (46)
2012 (17)
2010 (13)
2008 (9)
2011 (8)
2009 (4)
2007 (1)

UNIPROT ID/AC

1433B_MOUSE (4)
1433G_MOUSE (4)
1433S_MOUSE (4)
1433Z_MOUSE (4)
2A5A_MOUSE (4)
2A5E_MOUSE (4)
2AAA_MOUSE (4)
2AAB_MOUSE (4)
2ABA_MOUSE (4)
2ABD_MOUSE (4)
3HIDH_MOUSE (4)
4EBP2_MOUSE (4)
4ET_MOUSE (4)
4F2_MOUSE (4)
6PGD_MOUSE (4)
6PGL_MOUSE (4)
8ODP_MOUSE (4)
A16A1_MOUSE (4)
A16L1_MOUSE (4)
A5V2A0_SPHWW (4)
A5V2E2_SPHWW (4)
A5V2E5_SPHWW (4)
A5V2G0_SPHWW (4)
A5V2H3_SPHWW (4)
A5V2H4_SPHWW (4)
A5V2H5_SPHWW (4)
A5V2H6_SPHWW (4)
A5V2I2_SPHWW (4)
A5V2T2_SPHWW (4)
A5V2T3_SPHWW (4)

ENSEMBL ID

ENSG00000170477 (12)
ENSG00000147251 (5)
ENSG00000229353 (2)

CHEBI ID

CHEBI:84653 (1)
CHEBI:90497 (1)
CHEBI:84683 (1)
CHEBI:84682 (1)
CHEBI:84681 (1)
CHEBI:84675 (1)
CHEBI:84674 (1)
CHEBI:84673 (1)
CHEBI:84671 (1)
CHEBI:84670 (1)
CHEBI:84669 (1)
CHEBI:84667 (1)
CHEBI:84983 (1)
CHEBI:84976 (1)
CHEBI:84658 (1)
CHEBI:90496 (1)
CHEBI:84657 (1)
CHEBI:84656 (1)
CHEBI:90429 (1)
CHEBI:85004 (1)
CHEBI:71982 (1)
CHEBI:73889|CHEBI:72800 (1)
CHEBI:64905 (1)
CHEBI:85009 (1)
CHEBI:85023 (1)
CHEBI:85022 (1)
CHEBI:85016 (1)
CHEBI:90492 (1)
CHEBI:85001 (1)
CHEBI:44946|CHEBI:73234 (1)

Metabolite Name

GT2-d18:1/16:0 (1)
GQ1-d18:1/24:0 (1)
GQ1-d18:1/22:0 (1)
GQ1-d18:1/18:0 (1)
GM3-d18:1/24:2 (1)
GM3-d18:1/24:1 (1)
GM3-d18:1/24:0 (1)
GM3-d18:1/23:0 (1)
GM3-d18:1/22:1 (1)
GM3-d18:1/22:0 (1)
GM3-d18:1/21:0 (1)
GM3-d18:1/20:0 (1)
GM3-d18:1/18:0 (1)
GM3-d18:1/16:0 (1)
GM1-d18:1/24:1 (1)
GM1-d18:1/24:0 (1)
GM1-d18:1/16:0 (1)
GD1-d18:1/24:2 (1)
GD1-d18:1/24:1 (1)
GD1-d18:1/24:0 (1)
GD1-d18:1/23:0 (1)
GD1-d18:1/22:1 (1)
GD1-d18:1/22:0 (1)
GD1-d18:1/21:0 (1)
GD1-d18:1/20:0 (1)
GD1-d18:1/18:0 (1)
GD1-d18:1/16:0 (1)
PC 34:1 (1)

First Public Date

2013 (13)
2026 (6)
2014 (6)
2025 (5)
2024 (5)
2020 (5)
2019 (5)
2015 (4)
2018 (3)
2017 (3)
2021 (1)
2016 (1)

Classification

bacteria (5)
protozoa (1)

Modification

4x(15)N labeled L-arginine (51)
2x(15)N labeled L-lysine (49)
15.994915 (37)
4-tetrahydrothiazine-3-carboxylic acid (35)
57.021464 (32)
N6 (31)
N6-dimethyl-L-lysine (26)
Not available (26)
42.010565 (21)
-17.026549 (16)
4x(2)H labeled dimethylated residue (12)
4 (11)
-18.010565 (10)
+3amu) (7)
15.99491 (7)
57.02146 (7)
6x(2)H labeled dimethylated L-arginine (7)
45.029395 (5)
4x(2)H labeled dimethylated L-lysine (5)
79.966331 (5)
0.984016 (4)
58.005479 (4)
0.984 (3)
10.008269 (3)
3x(2)H labeled N6-acetyl-L-lysine (3)
42.01056 (2)
43.00581 (2)
Heavy form - site K (2)
-17.0266 (1)
14.01565 (1)

Study type

RNA-seq of coding RNA (10)
Transcription profiling by array (8)
ChIP-seq (2)
High-throughput sequencing (1)

Release Date

2021 (97)
2022 (89)
2020 (80)
2019 (76)
2023 (71)
2018 (61)
2025 (60)
2015 (57)
2016 (57)
2014 (50)
2017 (48)
2024 (45)
2012 (42)
2013 (40)
2010 (29)
2011 (28)
2009 (27)
2008 (14)
2007 (9)
2026 (7)
2005 (5)
2006 (4)
2004 (1)

Lab affiliation

University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (131)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (82)
CEA-Marcoule, ProGénoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Cèze, France (76)
EDyP (54)
Pacific Northwest National Laboratory (49)
CEA-Marcoule, ProGenoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Ceze, France (47)
Cellzome (42)
University of Victoria (38)
Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands (36)
Wageningen University (36)
University Hospital Cologne (32)
Vanderbilt University (32)
Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and BIOSS Centre for Biological Signalling Studies, University of Freiburg, 79104 Freiburg im Breisgau, Germany (28)
Head of the Curie Institute Mass Spectrometry Platform (28)
University of Edinburgh (28)
Head of Proteomics (27)
OncoProteomics Laboratory, Dept of Medical Oncology, VU University Medical Center, Amsterdam, The Netherlands (27)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (26)
The University of Melbourne (25)
Institute for Research in Immunology and Cancer, Department of Biochemistry, Department of Chemistry, Université de Montréal, Québec, Canada H3T 1J4 (22)
Institute of Molecular Biology (IMB) (22)
North Carolina State University (22)
Proteomics core facility, Biomedical Research Institute, Seoul National University Hospital (22)
The University of Sydney (22)
European Molecular Biology Laboratory (21)
Cornell University (20)
Pacific Northwest National Laboratory, USA (20)
Proteomics facility, Central Science Laboratory, University of Tasmania (20)
University of Washington (20)
Department of Microbiology and Immunology, The University of Melbourne, Victoria, Australia (19)

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A label-free shotgun proteomics analysis of macadamia nut

In this study, we present a first proteomic overview of macadamia nut using a label-free shotgun proteomic approach and prediction of their proteins with potential allergenic activity and cross-reactivity via an in silico analysis. The defense response proteins were the most abundant group of protei...

ORGANISM(S): Macadamia

2020-01-13 | PXD015364 | Pride