Silica purification

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Proteomics (445)
Transcriptomics (217)
Unknown (204)
Genomics (22)
Metabolomics (8)

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Homo sapiens (50)
Mus musculus (44)
Candida albicans (15)
Arabidopsis thaliana (14)
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uncultured prokaryote (1)
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sediment metagenome (2)
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pride (428)
biostudies-arrayexpress (227)
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Tissue

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Hodgkin lymphoma, mixed cellularity, stage IV (1)
Chronic granulomatous disease (1)
IRAK-4 Q293X mutation (1)
Squamous cell carcinoma (1)
Colonic adenocarcinoma (1)
Barrett's esophagus (1)
S enteritidis (1)
Hepatocellular carcinoma (1)

Technology Type

Mass Spectrometry (428)
Affinity purification coupled with mass spectrometry proteomics (297)
Shotgun proteomics (164)
Bottom-up proteomics (41)
Gel-based experiment (41)
Data-dependent acquisition (33)
Chemical cross-linking coupled with mass spectrometry proteomics (10)
Data-independent acquisition (10)
Mass spectrometry (7)
SWATH MS (7)
Top-down proteomics (7)
SRM/MRM (5)
Affinity proteomics (2)
All-ion fragmentation (2)
Mass spectrometry assay (1)
DiaPASEF (1)
HDMSE (1)
Mass spectrometry imaging (1)
PAcIFIC (1)

Instrument Platform

Illumina NovaSeq 6000 (7)
Scanning hardware (6)
Illumina HiSeq 2500 (6)
NextSeq 500 (5)
Axon GenePix 4000A scanning hardware (4)
G2565BA DNA microarray scanner [Agilent] (4)
ScanArray 4000 [PerkinElmer] (3)
Illumina HiSeq 1500 (3)
ScanArray Lite [PerkinElmer] (2)
NextSeq 2000 (2)
Illumina HiSeq 2000 (2)
Illumina HiSeq 4000 (2)
Sequel II (1)
Unknown (1)
E.Z.N.A. Total RNA Kit I (Omega Bio-tek) (1)
Axon GenePix4000B (1)
Agilent DNA Microarray Scanner Model # G2505B (1)
Agilent Scanner (1)
Not applicable (1)
Biotech Photometer (1)
Agilent DNA Microarray Scanner Model # G2505C (1)
G2500A Hewlett Packard (1)
Other (1)
ScanArray 5000 [PerkinElmer] (1)
GenePix Personal 4100A [Axon Instruments] (1)
Spectronic Helios Alpha UV-Vis spectrophotometer (1)
Bioanalyser (1)
ScanArray Express HT [PerkinElmer] (1)
Affymetrix Fluidics Station 400 (1)
Illumina NovaSeq X (1)

Publication Date

2023 (92)
2021 (63)
2022 (55)
2025 (54)
2020 (43)
2024 (41)
2019 (38)
2026 (30)
2010 (29)
2007 (28)
2018 (25)
2015 (22)
2017 (20)
2014 (20)
2011 (18)
2016 (17)
2012 (17)
2008 (17)
2013 (14)
2006 (14)
2009 (13)
2005 (7)
2004 (3)

CHEBI ID

CHEBI:15428 (3)
CHEBI:17754 (3)
CHEBI:16865 (3)
CHEBI:141139 (2)
CHEBI:147305 (2)
CHEBI:50128 (2)
CHEBI:520 (2)
CHEBI:26847 (2)
CHEBI:16860 (2)
CHEBI:24266 (2)
CHEBI:17521 (2)
CHEBI:26984 (2)
CHEBI:33508 (2)
CHEBI:17822 (2)
CHEBI:26271 (2)
CHEBI:22660 (2)
CHEBI:18186 (2)
CHEBI:17234 (2)
CHEBI:37084 (2)
CHEBI:30852 (2)
CHEBI:25017 (2)
CHEBI:30794 (2)
CHEBI:15741 (2)
CHEBI:16112 (2)
CHEBI:6650 (2)
CHEBI:36062 (2)
CHEBI:27266 (2)
CHEBI:18211 (2)
CHEBI:16995 (2)
CHEBI:17596 (2)

Metabolite Name

2,4,5-tricaffeoylaltraric acid (2)
2,3,5-tricaffeoylaltraric acid (2)
Protocatechuic acid (2)
Biflavonoid (2)
1,5-dicaffeoylquinic acid (2)
Altraric acid (2)
3-O-methylquercetin (2)
Quinic acid (2)
Glycerol (2)
Glucose (2)
(S)-3-methyl-2-oxovaleric acid (1)
Methylcitrate (1)
5-hydroxyanthraquinone-1,3-dicarboxylic acid (1)
Methyl 3-O-caffeoyl-4-O-feruloylquinate (1)
3,5-dicaffeoylquinic acid (1)
2-formyl tetrahydropyran-3-yl acetate (1)
Hydroxy-ent-kauren-18-oic acid (1)
Quercetin-3-O-methylpentoside-hexoside (1)
Di-methylquercetin (1)
1-octadecene (1)
5alpha-Androstan-3,7-Dione (1)
2-ethyltoluene (1)
Carbazole (1)
Cellotetraose (1)
1 monoolein (1)
Farnesal (1)
5,6-dimethylbenzimidazole (1)
Dioctyl phthalate (1)
Acetol (1)
1-methyl-L-tryptophan (1)

First Public Date

2025 (4)
2015 (3)
2014 (2)
2013 (2)
2026 (1)
2022 (1)
2021 (1)
2020 (1)

Modification

15.994915 (4)
57.021464 (4)
71.037114 (3)
2x(15)N labeled L-lysine (2)
4x(15)N labeled L-arginine (2)
-17.026549 (1)
-18.010565 (1)
42.010565 (1)
79.966331 (1)

Study type

Transcription profiling by array (159)
RNA-seq of coding RNA (36)
DNA-seq (4)
ChIP-seq (3)
ChIP-chip by array (2)
MicroRNA profiling by high throughput sequencing (2)
Comparative genomic hybridization by array (2)
RNA-seq of total RNA (2)
RNA-seq of non coding RNA (2)
Unknown experiment type (1)
Tiling path by array (1)
ChIP-chip by tiling array (1)
One-color microarray (1)
Human - High-throughput sequencing (1)
Human - One-color microarray (1)
Cell line - High-throughput sequencing (1)
CLIP-seq (1)
MicroRNA profiling by array (1)
Methylation profiling by array (1)

Release Date

2025 (33)
2010 (31)
2022 (28)
2021 (27)
2020 (27)
2007 (27)
2023 (23)
2019 (23)
2011 (23)
2024 (20)
2012 (19)
2008 (18)
2014 (17)
2013 (17)
2016 (16)
2018 (14)
2015 (13)
2009 (13)
2006 (13)
2017 (12)
2005 (7)
2026 (6)
2004 (3)
2001 (1)

Lab affiliation

Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (16)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (13)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (8)
CRUK Beatson Institute, Switchback Road, Glasgow G61 1BD, UK. (5)
Institute of Biochemistry II, Faculty of Medicine, Goethe University Frankfurt, Theodor-Stern-Kai 7, 60590 Frankfurt am Main, Germany. (4)
Stowers Institute for Medical Research (4)
CRUK - Scotland Institute - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (3)
Cell and Chemical Biology Leiden University Medical Center The Netherlands (3)
Department of Biochemistry, Purdue University (3)
Department of Experimental Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA (3)
Experimental Radiation Oncology, MD Anderson Cancer Center, Houston, TX, USA (3)
Faculty of Biology, University of Freiburg, Freiburg, Germany (3)
Institute of Immunology and Department of Orthopaedics of the Second Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, Zhejiang 310058, China (3)
Max Planck Institute of Immunobiology and Epigenetics Proteomics Unit Stuebeweg 51 79108 Freiburg, Germany (3)
Medical Oncology and Pulmonology, University Hospital Tübingen, Germany (3)
Medical Research Council Senior Research Fellow Associate Professor in RNA Biochemistry and Research Group Leader Centre for Synthetic and Systems Biology (SynthSys) University of Edinburgh Max Born Crescent CH Waddington Building, room 3.06 EH9 3BF Edinburgh UK (3)
CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, 1090 Vienna, Austria (2)
Christchurch Heart Institute, Department of Medicine, University of Otago, Christchurch (2)
Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and BIOSS Centre for Biological Signalling Studies, University of Freiburg, 79104 Freiburg im Breisgau, Germany (2)
Department of Biology, University of Fribourg, 1700 Fribourg, Switzerland (2)
Departments of Chemistry, Biological Sciences, Pathology, Microbiology and Immunology, Vanderbilt University (2)
Institute for Biochemistry and Molecular Biology, Faculty of Medicine, University of Bonn (2)
Institute of Biochemistry II, Goethe University School of Medicine, Theodor-Stern-Kai 7, 60590 Frankfurt am Main, Germany Buchmann Institute for Molecular Life Sciences, Goethe University Frankfurt, Riedberg Campus, Max-von-Laue-Straße 15, 60438 Frankfurt am Main, Germany (2)
Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China (2)
Kuleuven; Department: Biologie; unit: Moleculaire Biotechnologie van Planten en Micro-organismen (2)
Technical University of Munich, School of Medicine, Institute of Virology, 81675 Munich, Germany (2)
University of Toronto (2)
(1) Maisonneuve Rosemont Hospital Research Center, CIUSSS Est de l’Île de Montréal, Montreal, QC, Canada (2) Department of Medicine, University of Montreal, Montréal, QC, Canada (1)
1 German Cancer Consortium of Translational Cancer Research (DKTK) and German Cancer Research Center (DKFZ), Heidelberg, Germany 2 IIIrd Medical Department, Klinikum rechts der Isar, School of Medicine, Technical University of Munich, Munich, Germany 3 Center for Translational Cancer Research (TranslaTUM), School of Medicine, Technical University of Munich, Munich, Germany (1)
1. Center for Medical Biotechnology, VIB, Ghent, Belgium. 2. Department for Biomolecular Medicine, Ghent University, Ghent, Belgium 3. VIB Proteomics Core, VIB, Ghent, Belgium (1)

Tags

xref:ArrayExpress:E-MTAB-5429 (1)
xref:PubMed:25838073 (1)
xref:PubMed:27312200 (1)

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Rapid Regeneration and Reuse of Silica Columns from PCR Purification and Gel Extraction Kits.

Not available

S-EPMC6110862 | biostudies-literature

Mesoporous Silica Particle as an RNA Adsorbent for Facile Purification of In Vitro-Transcribed RNA.

Not available

S-EPMC10419103 | biostudies-literature

Adsorption and elution characteristics of nucleic acids on silica surfaces and their use in designing a miniaturized purification unit.

Not available

S-EPMC2245989 | biostudies-literature

Adsorption and Purification of Baicalin from Scutellaria baicalensis Georgi Extract by Ionic Liquids (ILs) Grafted Silica.

Not available

S-EPMC8073518 | biostudies-literature

The Extracellular RNA Quality Control (exRNAQC) study: Small RNA sequencing of RNA purification kit study (exRNAQC011)

To evaluate the impact of the RNA purification method on extracellular RNA (exRNA) sequencing, 8 different RNA purification kits were compared by applying Small RNA sequencing (Illumina) to exRNA from human healthy donor plasma. Minimum and maximum plasma input volumes recommended by the manufacture...

ORGANISM(S): Homo sapiens

2021-06-10 | E-MTAB-10505 | biostudies-arrayexpress

Chaotropic salt/silica-based purification of filamentous phage ssDNA genomes

PRJNA1538112 | ENA

Transcriptomic Responses of Synechocystis sp. PCC 6803 Encapsulated in Silica Gel

Global gene expression of Synechocystis sp. PCC 6803 encapsulated in silica gel was examined by microarray analysis. Cultures were encapsulated in gels derived from aqueous precursors and gels derived from alkoxide precursors and incubated under constant light for 24 hours prior to RNA extraction. C...

ORGANISM(S): Synechocystis sp. PCC 6803

2012-04-23 | E-GEOD-37482 | biostudies-arrayexpress

Bifunctional nickel-iminodiacetic acid-core-shell silica nanoparticles for the exclusion of high molecular weight proteins and purification of His-tagged recombinant proteins.

Not available

S-EPMC9063014 | biostudies-literature

A surface biotinylation strategy for reproducible plasma membrane protein purification and tracking of genetic and drug-induced alterations

In the past years several protocols for the proteomic profiling of plasma membrane proteins have been described. Nevertheless, comparative analyses have mainly focused on different variations of one approach [1-3]. To pave the way to high-performance differential plasma membrane proteomics, we compa...

ORGANISM(S): Homo sapiens (Human)

2022-02-22 | PXD002141 | Pride

Silicon metabolism in diatoms

We investigated the effects of extracellular silicic acid on the whole Phaeodactylum triconutum transcriptome. In this work, global transcription analyses were combined with comparative studies of other elements, and detailed analyses of the silicon transporters. Our results provide insight on Si-se...

ORGANISM(S): Phaeodactylum tricornutum

2009-09-29 | E-GEOD-12015 | biostudies-arrayexpress

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