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TranscriptomicsSynergism between PPAR? and glucocorticoid receptor signaling promotes self-renewal of BFU-E erythroid progenitors and increases red cell production [RNA-seq]
Analyses of gene expression by RNA-Seq in mouse E14.5 fetal liver burst-forming unit erythroid (BFU-E) cells untreated or treated by dexamethasone (DEX) with or without PPAR? agonist GW7647. RNA-Seq was performed on enriched populations of mouse BFU-E isolated from E14.5 fetal liver, as well as BFU-...
ORGANISM(S): Mus musculus 
2015-06-08 | E-GEOD-63836 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of E. coli O157:H7 growth in the absence or presence of HEp-2 epithelial cells
E. coli O157:H7 global gene expression profile is altered during growth in the presence of Hep-2 cells, relative to the absence of cells; We used Affymetrix E. coli 2.0 genechips to determine gene expression changes Experiment Overall Design: E. coli O157:H7 total RNA extracts were collected after a...
ORGANISM(S): Escherichia coli O157:H7 
2009-03-28 | E-GEOD-14238 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of E. coli under 121 conditions to generate a compendium of gene expression
Machine learning approaches offer the potential to systematically identify transcriptional regulatory interactions from a compendium of microarray expression profiles. However, experimental validation of the performance of these methods at the genome scale has remained elusive. Here we assess the gl...
ORGANISM(S): Escherichia coli 
2008-06-15 | E-GEOD-6836 | biostudies-arrayexpress
UnknownMolecular Characteristics of Extraintestinal Pathogenic E. coli (ExPEC), Uropathogenic E. coli (UPEC), and Multidrug Resistant E. coli Isolated from Healthy Dogs in Spain. Whole Genome Sequencing of Canine ST372 Isolates and Comparison with Human Isolates Causing Extraintestinal Infections.
Not available
S-EPMC7716232 | biostudies-literature
MetabolomicsHyperhomocysteinemia-related serum metabolome alterations not normalized by short-term folic acid treatment

Introduction

Hyperhomocysteinemia (HHCys) is an independent risk factor for various diseases such as cardiovascular diseases, Alzheimer's, and cancers. Folate deficiency is one of the significant reasons for HHCys. However, it is not known whether folate deficiency with HHCys is associated w...
2022-02-07 | MTBLS2150 | MetaboLights
TranscriptomicsPho regulon modulation of Enterohemorrhagic *Escherichia coli* O157:H7 virulence factors
In E. coli the phosphate homeostasis is regulated by the Pst system and the two-component system PhoB/R. Pathogens like E. coli O157:H7 are responsible for many outbreaks and can be found and survive in poor inorganic phosphate (Pi) environments. To understand global EHEC O157:H7 EDL933 strain respo...
ORGANISM(S): Escherichia coli 
2014-03-15 | E-GEOD-50529 | biostudies-arrayexpress
TranscriptomicsE. coli Anaerobic/aerobic transitions in chemostat
Gene-expression measurements were made over a 20 minute time course as steady state E. coli cells were subjected to an anaerobic to aerobic or an aerobic to anaerobic environmental change.
ORGANISM(S): Escherichia coli 
2012-07-17 | E-MTAB-996 | biostudies-arrayexpress
ProteomicsProteomics data of Escherichia phage vB_EcoS-EE09 isolated from wastewater treatment plant effluent and its infected and non-infected host E. coli DSM613
This dataset was created to (i) compare the protein expression of E. coli DSM613 cells infected and uninfected with phage vB_EcoS-EE09 and (ii) detect structural proteins of phage vB_EcoS-EE09. Thus, this set provides proteomic data of three setups: 1. Uninfected E. coli DSM613 (file names [file ID]...
ORGANISM(S): Escherichia coli Dhillonvirus 
2023-11-13 | PXD046455 | Pride
Escherichia coli Shotgun proteomics Bacteriophage Dhillonvirus Comparative proteomics Coliphage Strctural proteome 
UnknownSpecific circulating microRNAs during hepatitis E infection can serve as indicator for chronic hepatitis E.
Not available
S-EPMC7093451 | biostudies-literature
ProteomicsMutation T9I in Envelope conveys autophagy resistance of SARS-CoV-2 Omicron
To date five variants of concern (VOC) of SARS-CoV-2 have emerged that show increased immune evasion. While their evolving escape from humoral immune responses has been analyzed in detail, adaptation of SARS-CoV-2 to human innate immune processes like autophagy are less understood. Here we demonstra...
ORGANISM(S): Homo sapiens (Human) 
2025-06-06 | PXD048080 | Pride
Sars-cov-2 Variants of concern Autophagy Innate immunity Covid-19 
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