Bacteriophage - OmicsDI

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Unknown (5506)
Transcriptomics (2076)
Genomics (1343)
Proteomics (88)
Metabolomics (17)
Models (10)
Other (10)
Genomic (2)
Methylation profiling (1)

Organisms

Mus musculus (667)
Homo sapiens (656)
Arabidopsis thaliana (143)
Rattus norvegicus (108)
Drosophila melanogaster (41)
Saccharomyces cerevisiae (38)
Bos taurus (33)
Sus scrofa (24)
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Macaca mulatta (23)
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Thermus thermophilus HB8 (11)
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Ovis aries (7)
Caenorhabditis elegans (7)
cellular organisms (6)
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Scophthalmus maximus (4)

Organisms

Bacteriophage sp. (65)
Escherichia coli (30)
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Mus musculus (11)
Homo sapiens (10)
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Thermus thermophilus HB8 (6)
Vibrio anguillarum (6)
human gut metagenome (6)
Escherichia phage (5)
Caudoviricetes (5)
synthetic construct (5)
Inovirus M13 (4)
Tequatrovirus T4 (4)
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pig gut metagenome (4)
insect gut metagenome (4)
viral metagenome (4)
Pseudomonas aeruginosa PAO1 (4)
Stenotrophomonas phage vB_SmaS-DLP (3)
Escherichia coli CFT073 (3)
Campylobacter jejuni (3)
Salmonella enterica subsp. enterica serovar Typhimurium (3)
Enterococcus faecalis (3)
hot springs metagenome (3)

Repository

biostudies-arrayexpress (2038)
ENA (1299)
geo (92)
pride (56)
MassIVE (18)
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BioModels (10)
EGA (7)
jPOST (7)
iProX (5)
GNPS (3)
dbGaP (2)
PanoramaPublic (2)
GPMDB (1)

Tissue

Cell culture (4)
Cell suspension culture (3)
B cell (1)
Feces (1)
Heart (1)
Infected cell (1)
Prokaryotic cell (1)
Smooth muscle cell (1)
Urine (1)
Whole body (1)

Disease

Normal (23)
Melanoma (4)
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Hypertension (2)
Primary tumor (2)
Head and neck squamous cell carcinoma (2)
Chronic myelogenous leukemia (2)
Murine hereditary hemochromatosis (2)
Breast cancer (2)
Inoculated with P. syringae pv. tomato strain DC3000 + avrRps4 (1)
Non tumoral reference sample (1)
Neuroendocrine tumor (1)
Arrhythmias and right ventricular dysfunction (1)
Lymphoblastic leukemia (1)
Ovarian carcinoma (1)
Alopecia (1)
Pseudomonas aeruginosa rsmA mutant infected (1)
Dermal neurofibroma (1)
Hepatomegaly (1)
Anaplastic large cell lymphoma has DiseaseStaging II (1)
Locally advanced breast carcinoma (LABC; non-inflammatory) (1)
Epithelioid mesothelioma (1)
Large cell carcinoma (1)
Wilms' tumor (1)
Invasive pituitary adenoma (1)
B-cell chronic lymphocytic leukemia (1)
CUP (1)
Ependymoma (1)
Low-stage neuroblastoma (1)

Technology Type

Mass Spectrometry (56)
Shotgun proteomics (20)
Bottom-up proteomics (18)
Data-dependent acquisition (10)
Mass spectrometry (9)
Affinity purification coupled with mass spectrometry proteomics (6)
Mass spectrometry assay (4)
Data-independent acquisition (3)
Gel-based experiment (3)
SWATH MS (3)
SRM/MRM (2)
NMR spectroscopy (1)
All-ion fragmentation (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
DiaPASEF (1)
HDMSE (1)

Instrument Platform

Illumina NovaSeq 6000 (19)
NextSeq 2000 (10)
Illumina HiSeq 2500 (7)
NextSeq 550 (5)
NextSeq 500 (5)
G2565BA DNA microarray scanner [Agilent] (4)
Illumina HiSeq 2000 (4)
418 [Affymetrix] (3)
ScanArray Express HT [PerkinElmer] (3)
GenePix 4000B [Axon Instruments] (3)
428 [Affymetrix] (2)
HP GeneArray [Affymetrix/HP] (2)
Axon- GenePix4000B (2)
Affymetrix (2)
Novogene NGS DNA Library Prep Set (Cat No.PT004) (1)
TruSeq Nano DNA Low Throughput library preparation Kit (Illumina, San Diego, USA, REF#20015964) (1)
PureGene DNA extraction Kit (Qiagen) (1)
PEG8000, NaCl, DNase, Benzonase, EDTA, SDS (1)
PromethION (1)
10X Genomics Chromium Controller (1)
Microarray scanner system (1)
GeneChip Scanner 2500 (1)
Fluidics station (1)
GenePix 4000B [Axon] (1)
GeneChip 3000 7G scanner (1)
Agilent DNA Microarray Scanner G2565CA (1)
In Silico Molecular Cloning Program (1)
Illumina iScan (1)
Ultracentrifuge (1)
Agilent 2100 Bioanalyzer (1)

Publication Date

2010 (268)
2012 (224)
2013 (222)
2014 (197)
2011 (196)
2008 (193)
2015 (191)
2009 (127)
2016 (101)
2007 (75)
2022 (71)
2025 (41)
2006 (41)
2005 (39)
2021 (35)
2026 (34)
2018 (34)
2024 (33)
2017 (28)
2023 (27)
2020 (21)
2019 (18)
2004 (16)
2003 (9)
2002 (1)

UNIPROT ID/AC

P04483 (1)
P03023 (1)

CHEBI ID

CHEBI:17568 (5)
CHEBI:17368 (5)
CHEBI:15676 (4)
CHEBI:17562 (4)
CHEBI:17361 (4)
CHEBI:17748 (4)
CHEBI:15891 (4)
CHEBI:15603 (4)
CHEBI:17295 (4)
CHEBI:34690 (3)
CHEBI:3219 (3)
CHEBI:17401 (3)
CHEBI:10049 (3)
CHEBI:28866 (3)
CHEBI:9123 (3)
CHEBI:28864 (3)
CHEBI:29013 (3)
CHEBI:17302 (3)
CHEBI:36491 (3)
CHEBI:28997 (3)
CHEBI:16356 (3)
CHEBI:37574 (3)
CHEBI:17768 (3)
CHEBI:17431 (3)
CHEBI:17992 (3)
CHEBI:30805 (3)
CHEBI:545687 (3)
CHEBI:33697 (2)
CHEBI:35222 (2)
CHEBI:61448 (1)

Metabolite Name

Uracil (4)
Melibiose (4)
Oleic acid (4)
Dodecanoic acid (4)
Adenine (4)
Myristic acid (4)
Cytidine (4)
L-Phenylalanine (4)
Inosine (4)
Hypoxanthine (4)
Bupropion (3)
Xanthosine 5-triphosphate (3)
2-Methoxy-estradiol-17b 3-glucuronide (3)
Thiamine monophosphate (3)
Pentadecanal (3)
Agmatine (3)
Palmitaldehyde (3)
Tobramycin (3)
Cytidine monophosphate (3)
FAD (3)
AMP (3)
Thymine (3)
Pyroglutamic acid (3)
Myristoleic acid (3)
Carnosine (3)
Ornithine (3)
L-Arginine (3)
Succinic acid (3)
4-Hydroxybenzoic acid (3)
Palmitoleic acid (3)

First Public Date

2026 (225)
2025 (178)
2024 (135)
2023 (112)
2022 (107)
2020 (98)
2017 (71)
2021 (69)
2018 (69)
2019 (59)
2013 (50)
2014 (45)
2015 (40)
2016 (32)
2012 (9)

Modelling Approach

Ordinary differential equation model (9)

Lab affiliation

Department of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel (3)
Department of Microbial Proteomics, University of Greifswald, Greifswald, Germany (2)
Director, Proteome Center Rostock, University of Rostock, Germany (2)
Max Planck Institute for Terrestrial Microbiology Marburg Germany (2)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (2)
Rumanant Diseases and Immunolgy Research (2)
Australian Institute for Bioengineering and Nanotechnology, The University of Queensland (1)
Bavarian Center for Biomolecular Mass Spectrometry Gregor-Mendel-Strasse 4 85354 Freising Germany (1)
CERELA CONICET - Argentina (Reference Center for Lactobacilli, National Scientific and Technical Research Council - Argentina) (1)
CSIC (1)
Center for Structural Biology, Vlaams Instituut voor Biotechnologie and Structural Biology Brussels, Vrije Universiteit Brussel, Pleinlaan 2, B-1050 Brussel, Belgium (1)
Centre to Impact AMR, Monash University; Clayton, 3800, Australia Infection Program, Biomedicine Discovery Institute and Department of Microbiology, Monash University; Clayton, 3800, Australia (1)
Dana-Farber Cancer Institute, Harvard Medical School, Howard Hughes Medical Institute (1)
Department of Biological Engineering, Massachusetts Institute of Techonology, 77 Massachusetts Avenue, 56-731 Cambridge, MA 02139, USA Tel: 617-253-8017 (1)
Department of Bionanoscience, Delft University of Technology (1)
Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, USA (1)
Department of Fundamental Microbiology, University of Lausanne, 1015 Lausanne, Switzerland. (1)
Department of Medical Biochemistry and Microbiology, Uppsala University, Box 582, 75123, Uppsala, Sweden (1)
Department of Molecular Biosciences, The Wenner-Gren Institute, Stockholm University (1)
Division of Gene Technology, KU Leuven, B-3001 Leuven, Belgium (1)
European Molecular Biology Laboratory Heidelberg (1)
Faculty of Medicine and Health, Northern Clinical School, The University of Sydney (1)
Gene Expression and Regulation Section, Laboratory of Biochemistry and Genetics, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD, USA (1)
George Mason University (1)
Hans Merensky Chair in Avocado Research, Department of Biochemistry, Genetics and Microbiology, Faculty of Natural and Agricultural Sciences, Forestry and Agricultural Biotechnology Institute, University of Pretoria, Pretoria 0028, South Africa (1)
Helmholtz Centre for Environmental Research - UFZ, Environmental Biotechnology and Technische Universität Berlin, Geobiotechnology (1)
Infection & Immunity Program, Biomedicine Discovery Institute and Department of Microbiology, Monash University, Clayton, Australia (1)
Institute of Laboratory Medicine, Ludwig-Maximilians-University Munich, Marchioninistr. 15, 81377 Munich, Germany (1)
Institute of Technology, University of Tartu, Estonia (1)
Laboratory of Gene Technology Kasteelpark Arenberg 21 3001 Leuven (Heverlee) Belgium (1)

IsPrivate

False (10)

Classification

viruses (310)
bacteria (185)

Modification

Not available (2)

Study type

Transcription profiling by array (1754)
RNA-seq of coding RNA (49)
ChIP-chip by array (37)
Comparative genomic hybridization by array (33)
Unknown experiment type (26)
Other (23)
ChIP-chip by tiling array (20)
ChIP-seq (19)
RNA-seq of coding RNA from single cells (15)
Transcription profiling by tiling array (11)
Methylation profiling by high throughput sequencing (9)
RNAi profiling by array (7)
DNA-seq (5)
RNA-seq of non coding RNA (4)
Human - Two-color microarray (3)
Cell line - Two-color microarray (2)
Animal - One-color microarray (2)
Animal - High-throughput sequencing (2)
Transcription profiling by array;comparative genomic hybridization by array (1)
One-color microarray (1)
Animal - Single-cell sequencing (1)
High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
Genotyping by array (1)
Bisulfite-seq (1)
RIP-seq (1)
MicroRNA profiling by array (1)
RNA-seq of total RNA (1)

Release Date

2022 (531)
2021 (471)
2012 (459)
2023 (454)
2024 (423)
2013 (417)
2014 (408)
2015 (403)
2010 (391)
2025 (384)
2020 (373)
2011 (372)
2016 (323)
2018 (300)
2019 (297)
2008 (296)
2017 (267)
2009 (228)
2007 (143)
2006 (109)
2005 (99)
2026 (74)
2004 (71)
2003 (64)
2002 (52)
2001 (41)
1999 (39)
2000 (26)
1998 (22)
1997 (2)

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Comparative Transcriptome and Energy Metabolome Profiling Unravel the Key Role of GlcN6P Metabolic Pathway in Resistance against Bacteriophage in Enterotoxigenic Escherichia coli

The rapid emergence of phage-resistant bacterial mutants is a major challenge for phage application in the food industry. The resistance mechanisms of Enterotoxigenic E. coli (ETEC) against phage infection are largely unknown. In Escherichia coli, RapZ regulates gluc...

2025-12-15 | MTBLS13411 | MetaboLights

Bacteriophage BFK 20 gene expression study

This microarray serie represents the complete gene expression study of bacteriophage BFK 20 during the infection of its host Brevibacterium flavum CCM 251. Gene expression was measured at fourteen time intervals (0, 1, 3, 5, 7, 10, 15, 20, 30, 40, 50, 60, 80 and 120 min) during phage infection accor...

ORGANISM(S): Bacteriophage BFK20

2010-07-01 | E-GEOD-3164 | biostudies-arrayexpress

Biological characterization of virulent therapeutic bacteriophage PAK_P3 infecting Pseudomonas aeruginosa.

We have isolated and characterized several bacteriophages infecting Pseudomonas aeruginosa distantly related to Felix O1 virus and proposed they form a new subfamily named Felixounavirinae. The infectious cycle of bacteriophages belonging to this subfamily has not been studied yet in terms of gene e...

ORGANISM(S): Pseudomonas aeruginosa

2016-07-20 | E-GEOD-76513 | biostudies-arrayexpress

bacteriophage

Bacteroides Bacteriophage

PRJNA1246531 | ENA

Bacteriophage sp. isolate:Salmonella bacteriophage-1252

Bacteriophage sp. isolate:Salmonella bacteriophage-1252 Genome sequencing and assembly

PRJNA906125 | ENA

Bacteriophage sp.

Bacteriophage sp. Genome sequencing

PRJNA271513 | ENA

bacteriophage SEP1