Skin regeneration

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Unknown (1951)
Genomics (354)
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Organisms

Mus musculus (209)
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Canis lupus familiaris (25)
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Elaphurus davidianus (1)
Haemaphysalis longicornis (1)

Organisms

Mus musculus (167)
Homo sapiens (53)
Rattus norvegicus (11)
Rangifer tarandus (6)
Danio rerio (6)
Ambystoma mexicanum (4)
Canis lupus familiaris (3)
Acomys cahirinus (2)
Anolis carolinensis (2)
Xenopus tropicalis (2)
Xenopus laevis (2)
Gallus gallus (2)
Bolitoglossa ramosi (1)
Bolitoglossa vallecula (1)
Lepidosiren paradoxa (1)
Sparus aurata (1)
Anser sp. (1)
human skin metagenome (1)
Misgurnus anguillicaudatus (1)
Capra hircus (1)
Bos taurus (1)
Sus scrofa (1)
metagenome (1)

Repository

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geo (229)
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pride (25)
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Tissue

Skin (15)
Cell culture (3)
Keratinocyte (3)
Fibroblast (2)
Cartilage (1)
Ear (1)
HaCaT cell (1)
Peritoneum (1)
Placenta (1)
Sensory neuron of dorsal root ganglion (1)
Spinal root (1)
Stem cell (1)
Tear (1)

Disease

Wounds and Injuries (6)
HPV positive (1)
Normal (1)
Sciatic nerve (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass Spectrometry (25)
Shotgun proteomics (11)
Bottom-up proteomics (8)
Data-dependent acquisition (6)
Top-down proteomics (3)
Affinity purification coupled with mass spectrometry proteomics (2)
Mass spectrometry (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Data-independent acquisition (1)
Gel-based experiment (1)
SWATH MS (1)

Instrument Platform

NextSeq 500 (4)
Illumina NovaSeq 6000 (3)
418 [Affymetrix] (2)
Illumina HiSeq 2500 (2)
Illumina HiSeq 2000 (2)
LTQ Orbitrap Elite (2)
Analyses performed on a Linux HPC cluster with Intel Xeon CPUs (1)
Agilent 4200 TapeStation; PCR thermal cycler (Applied Biosystems) (1)
Qubit Fluorometer 3.0 (Thermo Fisher Scientific, USA); Agilent 4200 TapeStation (Agilent Technologies, USA) (1)
NextSeq 2000 (1)
NextSeq 550 (1)
Illumina HiSeq 4000 (1)
Q Exactive HF (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS - negative - hilic (1)

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2010 (13)
2008 (12)
2011 (11)
2017 (10)
2018 (7)
2007 (6)
2009 (5)
2005 (2)
2006 (1)
2004 (1)

UNIPROT ID/AC

P49767 (1)

Metabolite Name

Quercetin-3-D-xyloside (Reynoutrin) (1)
Procyanidin B peak4 (1)
Isorhamnetin 3-L-arabinopyranosyl-(1->6)-galactoside (1)
Isorhamnetin 3-xylosyl-(1->6)-glucoside (1)
Isorhamnetin 3-vicianoside (1)
Myricetin 3,4'-di-O-alpha-L-rhamnopyranoside (1)
Quercetin 3-rhamnoside-3'-glucoside (1)
Annulatin 7-rhamnoside-3'-xyloside (1)
Myricetin 3-rhamnosyl-(1->2)-rhamnoside (1)
8-C-Glucosylquercetin 2''-O-rhamnoside (1)
Herbacetin 8-rutinoside (1)
6-Hydroxykaempferol 3-rutinoside (1)
Robinetin 3-rutinoside (1)
Quercetin 3-methyl ether 7-alpha-L-arabinofuranosyl-(1->6)-glucoside (1)
Isorhamnetin 3-xylosyl-(1->2)-galactoside (1)
Isorhamnetin 3-sambubioside (1)
Isorhamnetin 3-glucoside-7-xyloside (1)
Isorhamnetin 3-glucoside-7-alpha-L-arabinopyranoside (1)
Kaempferol 7,4'-diglucoside (1)
Kaempferol 3,5-diglucoside (1)
Kaempferol 7-sophoroside (1)
8-Hydroxyapigenin 8-sophoroside (1)
Luteolin 3',4'-diglucoside (1)
Luteolin 7-laminaribioside (1)
Orientin 3'-O-glucoside (1)
6-C-Glucosylkaempferol 3-O-glucoside (1)
Isorhamnetin 3-apiosyl-(1->2)-galactoside (1)
Isorhamnetin 3-apiosyl-(1->2)-glucoside (1)
Luteolin 7-galactosyl-(1->6)-galactoside (1)
Luteolin 7-gentiobioside (1)

IsPrivate

False (1)

First Public Date

2024 (56)
2026 (53)
2025 (52)
2023 (30)
2022 (29)
2020 (29)
2021 (15)
2019 (15)
2014 (15)
2018 (8)
2017 (8)
2015 (8)
2016 (6)

Modelling Approach

Ordinary differential equation model (1)

Study type

Transcription profiling by array (103)
RNA-seq of coding RNA (18)
ChIP-seq (5)
Unknown experiment type (2)
Other (2)
RNA-seq of coding RNA from single cells (2)
Animal - High-throughput sequencing (1)
Single nucleus RNA sequencing (1)
RNA-seq of non coding RNA (1)

Release Date

2025 (295)
2022 (242)
2023 (230)
2021 (225)
2024 (222)
2020 (156)
2019 (116)
2018 (96)
2017 (92)
2016 (78)
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2014 (62)
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2011 (25)
2012 (24)
2010 (19)
2008 (14)
2009 (12)
2007 (11)
2006 (4)
2005 (3)
2004 (2)
2003 (1)

Lab affiliation

Institute of Molecular and Cell Biology, University of Tartu, Riia 23b, 51010, Tartu, Estonia (3)
1) Department of Pathology, Feinberg School of Medicine, Northwestern University, Chicago, Illinois 60611, USA 2) Department of Dermatology, Feinberg School of Medicine, Northwestern University, Chicago, Illinois 60611, USA 3) Robert H. Lurie Comprehensive Cancer Center, Northwestern University, Chicago, Illinois 60611, USA (1)
Biological Imaging Laboratory for Disease and Exposure Research (BILDER), Department of Chemistry, North Carolina State University, Raleigh, NC, 27695, USA (1)
Center for Regenerative Therapies TU Dresden, Fetscherstraße 105, 01307 Dresden, Germany (1)
College of Ecology-Environment Engineering, Qinghai University (1)
Coordenadora do laboratório de espectrometria de massas, LNBio, CNPEM, Brasil. (1)
Department of Biochemistry and Molecular Biology, University of Calgary, Alberta, Canada; Department of Physiology and Pharmacology, University of Calgary, Alberta, Canada; The Hotchkiss Brain Institute, University of Calgary, Alberta, Canada; McCaig Institute for Bone and Joint Health, University of Calgary, Alberta, Canada. (1)
Department of Biochemistry and Molecular Genetics, School of Medicine, University of Colorado, Aurora, CO, USA (1)
Department of Biosciences, University of Salzburg (1)
Department of Dermatology Johns Hopkins School of Medicine (1)
Division of Plastic and Reconstructive Surgery, The First Affiliated Hospital of Sun Yat-sen University (1)
Faculty of Medicine, Department of Pharmacology, University of Helsinki, Finland (1)
Institute of Biomedical Chemistry, "Human Proteome" Core Facility Centre (1)
Institute of Health and Sport Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba 305-8574, Ibaraki, Japan (1)
LBPC-PPC, Montpellier University, IRMB CHU Montpellier, INM INSERM, Montpellier, Occitanie, France (1)
Laboratory for Structural and Computational Proteomics, Carlos Chagas Institute, Fiocruz, Curitiba, Paraná, Brazil (1)
Ludwig Boltzmann Institute for Traumatology, The Research Center in Cooperation with AUVA, Austrian Cluster for Tissue Regeneration, The laboratory for Tissue Damage Responses in Regeneration and Aging, Donaueschingenstrasse 13, A-1200 Vienna, Austria, (1)
Ludwig Boltzmann Institute for Traumatology, The Research Center in Cooperation with AUVA, Austrian Cluster for Tissue Regeneration, The laboratory for Tissue Damage Responses in Regeneration and Aging,Donaueschingenstrasse 13, A-1200 Vienna, Austria, (1)
Max Planck Institute for Biology of Ageing, 50931 Cologne, Germany Cologne Excellence Cluster for Stress Responses in Ageing-associated diseases (CECAD), University of Cologne, 50931 Cologne, Germany Helsinki Institute of Life Science and Wihuri Research Institute, Biomedicum Helsinki, University of Helsinki, 00290 Helsinki, Finland Stem Cells and Metabolism Research Program, Faculty of Medicine, University of Helsinki, 00290 Helsinki Finland (1)
Proteomics Core Facility, Medical University of Vienna, Vienna, Austria (1)
Roskilde University, Denmark Institute for Science and Environment Molecular and Medical Biology (1)
School of Pharmacy Mass Spectrometry Center, Department of Pharmaceutical Sciences, University of Maryland, Baltimore. (1)
University (1)

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Skin healing and scale regeneration in fed and unfed sea bream, Sparus auratus

Fish scales are an important reservoir of calcium and phosphorus and together with the skin function as an integrated barrier against environmental changes and external aggressors. Histological studies have revealed that the skin and scales regenerate rapidly in fish when they are lost or damaged. I...

ORGANISM(S): Sparus aurata

2012-01-24 | E-GEOD-30717 | biostudies-arrayexpress

Transcription profiling of mouse FVB/N wild type and transgenic Tg.AC mice to examine skin papilloma development

This study analyzes gene expression associated with papilloma development in Tg.AC v-Ha-ras transgenic mice and identifies novel genes and biological processes that may be critical to skin carcinogenesis in these mice. Epidermal abrasion was used to synchronously induce epidermal regeneration in FV...

ORGANISM(S): Mus musculus

2008-06-11 | E-GEOD-11136 | biostudies-arrayexpress

Gene expression profiling of sensitive skin

Sensitive skin is a hyperactive skin condtion, characterized by prickling, burning, itching, stinging, pain, or tingling sensation, which develops in response to various internal and external stimulants that can be tolerated by most people. The pathophysiology involved in the development of sensitiv...

ORGANISM(S): Homo sapiens

2015-11-03 | E-GEOD-48506 | biostudies-arrayexpress

Transcription profiling time series of Danio rerio heart regeneration

Amputation of heart tissue followed by regeneration of the heart. Samples were taken at 0 hpa (hours post-amputation), 6 hpa, 12 hpa, 24 hpa, 3 dpa and 5 dpa.

ORGANISM(S): Danio rerio

2008-09-05 | E-MEXP-1239 | biostudies-arrayexpress

Skin regeneration is enabled in the absence of fibroblast inflammatory priming

Mammalian skin wounds heal by forming fibrotic scars. We report that reindeer antler velvet exhibits regenerative wound healing, whereas identical injury to back skin forms scar. This regenerative capacity was retained following ectopic transplantation of velvet to scar-forming sites. Single-cell mR...

ORGANISM(S): Homo sapiens (Human)

2023-02-23 | PXD035749 | Pride

Thrombospondin-4 is a soluble dermal signal that selectively promotes fibroblast migration and keratinocyte proliferation for skin regeneration and wound healing

Thrombosponin-4 (THBS4) is a non-structural extracellular matrix molecule associated with tissue regeneration and a variety of pathological processes characterized by increased cell proliferation and migration. However, the mechanisms of how THBS4 regulates cell behaviour as well as the pathways con...

ORGANISM(S): Homo sapiens (Human)

2022-02-17 | PXD027364 | Pride

Burns Thrombospondin-4 Wound healing Psoriasis Fibroblasts Skin regeneration

Proteomic Analysis in Scar-Free Skin Regeneration in Acomys cahirinus

Comparative Proteomic Analysis in Scar-Free Skin Regeneration in Acomys cahirinus and Scarring Mus musculus

ORGANISM(S): Mus Musculus (ncbitaxon:10090)

2019-11-24 | MSV000084615 | MassIVE

Gene regulation in denervated hairy skin of the adult rat

This study aimed to quantify the regulation of transcripts in the hairy skin of the back of adult rats in the condition of loss of sensory and autonomic (sympathetic) innervation (i.e., denervated). Denervated skin has reduced wound healing capacity, reduced proliferation of epidermal progenitor cel...

ORGANISM(S): Rattus norvegicus

2014-04-08 | E-GEOD-54356 | biostudies-arrayexpress

Gene expression arrays of cardiomyocyte ribosome-associated RNAs during zebrafish heart regeneration

A transgenic line cmlc2:TRAP was made to express EGFP-fused ribosomal protein L10a (EGFP-L10a) in zebrafish cardiomyocytes. Then ribosome-associated RNAs were immuoprecipitated from uninjured and injured adult cmlc2:TRAP fish to determine the differential expression changes during zebrafish heart re...

ORGANISM(S): Danio rerio

2013-08-01 | E-GEOD-48914 | biostudies-arrayexpress

Ablation of coactivator Med1 regulates bulge keratinocyte stem cells and accelerates epidermal regeneration after injury [10wk skin]

Transcriptional coactivator Mediator complex facilitates transcription of various transcription factors. Previously, we have generated Med1 conditional null mice, where a critical subunit of Mediator, Med1, is removed from keratinocytes. Here we present evidence that ablation of Med1 accelerated epi...

ORGANISM(S): Mus musculus

2014-01-01 | E-GEOD-50671 | biostudies-arrayexpress

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