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TranscriptomicsTranscriptome sequencing on a time series of potato infected with Globodera pallida to explore the sex determination
We explored the sex determination of Globodera pallida. To do so, we grew cuttings of the potato cultivar Desiree on Gamborg B5 medium supplemented with either 1.5 g/L or 20 g/L sucrose. 14-day-old cuttings were inoculated with 100 G. pallida E400 Rookmaker juveniles. Infected root tissue was harves...
ORGANISM(S): Globodera pallida 
2025-11-25 | E-MTAB-16117 | biostudies-arrayexpress
TranscriptomicsSmall RNA-seq on a time series of potato infected with Globodera pallida
We explored the sex determination of Globodera pallida. To do so, we grew cuttings of the potato cultivar Desiree on Gamborg B5 medium supplemented with either 1.5 g/L or 20 g/L sucrose. 14-day-old cuttings were inoculated with 100 G. pallida E400 Rookmaker juveniles. Infected root tissue was harves...
ORGANISM(S): Globodera pallida 
2025-11-05 | E-MTAB-15069 | biostudies-arrayexpress
GenomicsDNAseq of five generations of a selection experiment on two populations of Globodera pallida
We aimed to identify loci under selection for virulence in the potato cyst nematode Globodera pallida. Therefore, two G. pallida populations with suspected virulence, designated AMPOP02 and AMPOP10, were used in a selection experiment on the resistant potato variety Seresta. The selection experiment...
ORGANISM(S): Globodera pallida 
2025-08-05 | E-MTAB-15408 | biostudies-arrayexpress
TranscriptomicsRNA-seq of Arabidopsis thaliana Col-0 and opr2-1 mutants over four timepoints and (mock)infection with Meloidogyne incognita
We compared the gene expression of wild-type Col-0 and a T-DNA mutant SALK_116381C (opr2-1). We either infected or mock-infected the plants with the root knot nematode Meloidogyne incognita and measured the root transcriptome after 0, 1, 4, and 7 days post infection using RNA-seq. The aim of the exp...
ORGANISM(S): Arabidopsis thaliana 
2022-12-24 | E-MTAB-11583 | biostudies-arrayexpress
GenomicsDNA sequencing of Heterodera schachtii IRS (Woensdrecht) population
In order to polish a long-read genome assembly, short-read illumina data was obtained from Heterodera schachtii cysts (Woensdrecht population from IRS, the Netherlands). Cysts where obtained from infected plant material. Nematodes were cleaned using a sucrose gradient centrifugation step. Thereafter...
ORGANISM(S): Heterodera schachtii 
2023-11-03 | E-MTAB-13472 | biostudies-arrayexpress
TranscriptomicsMicroarray experiment on M. incognita infected and uninfected material in A.thaliana Col-0 plants and A. thaliana ERF6 mutated plants
In this experiment we investigate the transcription profile of M. inocognita infection at the start of the infection and 7 days later in A. thalinana Col-0 plants. This was compared to M. incognita infected material of the plant line erf6-1, a T-DNA insertion mutant in ERF6. The data showed the rol...
ORGANISM(S): Arabidopsis thaliana 
2019-01-10 | E-MTAB-6711 | biostudies-arrayexpress
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