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ProteomicsD vulgaris WT-IPFG07 chemostat comparison
Parallel chemostats of Desulfovibrio vulgaris Hildenborough WT and IPFG07 (DsrC low-expression) mutant were sampled over 5 turnovers at steady-state. Extracted proteins were digested with trypsin and peptides were isotopically labeled for quantification using the diDO-IPTL methodology (Waldbauer et ...
ORGANISM(S): Desulfovibrio Vulgaris Str. Hildenborough (ncbitaxon:882) 
2018-11-26 | MSV000083165 | MassIVE
TranscriptomicsAnaerobic Oxidation of Benzene by the Hyperthermophilic Archaeon Ferroglobus placidus (Phenol vs. Benzoate)
Anaerobic benzene oxidation coupled to the reduction of Fe(III) was studied in Ferroglobus placidus in order to learn more about how such a stable molecule could be metabolized under strict anaerobic conditions. F. placidus conserved energy to support growth at 85°C in a medium with benzene provide...
ORGANISM(S): Ferroglobus placidus DSM 10642 
2011-07-19 | E-GEOD-28549 | biostudies-arrayexpress
TranscriptomicsAnaerobic Oxidation of Benzene by the Hyperthermophilic Archaeon Ferroglobus placidus (Benzene vs. Acetate)
Anaerobic benzene oxidation coupled to the reduction of Fe(III) was studied in Ferroglobus placidus in order to learn more about how such a stable molecule could be metabolized under strict anaerobic conditions. F. placidus conserved energy to support growth at 85°C in a medium with benzene provide...
ORGANISM(S): Ferroglobus placidus DSM 10642 
2011-07-19 | E-GEOD-30798 | biostudies-arrayexpress
TranscriptomicsAnaerobic Oxidation of Benzene by the Hyperthermophilic Archaeon Ferroglobus placidus (Benzene vs. Phenol)
Anaerobic benzene oxidation coupled to the reduction of Fe(III) was studied in Ferroglobus placidus in order to learn more about how such a stable molecule could be metabolized under strict anaerobic conditions. F. placidus conserved energy to support growth at 85°C in a medium with benzene provide...
ORGANISM(S): Ferroglobus placidus DSM 10642 
2011-07-19 | E-GEOD-30799 | biostudies-arrayexpress
TranscriptomicsAnaerobic Oxidation of Benzene by the Hyperthermophilic Archaeon Ferroglobus placidus (Benzene vs. Benzoate)
Anaerobic benzene oxidation coupled to the reduction of Fe(III) was studied in Ferroglobus placidus in order to learn more about how such a stable molecule could be metabolized under strict anaerobic conditions. F. placidus conserved energy to support growth at 85°C in a medium with benzene provide...
ORGANISM(S): Ferroglobus placidus DSM 10642 
2011-07-19 | E-GEOD-30801 | biostudies-arrayexpress
TranscriptomicsAnaerobic Oxidation of Benzene by the Hyperthermophilic Archaeon Ferroglobus placidus
This SuperSeries is composed of the following subset Series: GSE28549: Anaerobic Oxidation of Benzene by the Hyperthermophilic Archaeon Ferroglobus placidus (Phenol vs. Benzoate) GSE30798: Anaerobic Oxidation of Benzene by the Hyperthermophilic Archaeon Ferroglobus placidus (Benzene vs. Acetate) GSE...
ORGANISM(S): Ferroglobus placidus DSM 10642 
2011-07-19 | E-GEOD-30796 | biostudies-arrayexpress
TranscriptomicsMechanism for Fe(III) Reduction in Pelobacter carbinolicus
Pelobacter carbinolicus is phylogenetically intertwined with the Geobacteraceae, a family of deltaproteobacteria which couple oxidation of organic compounds to Fe(III) reduction. Whereas Geobacter species completely oxidize organic compounds to CO2, Pelobacter species either ferment or oxidize shor...
ORGANISM(S): Pelobacter carbinolicus 
2008-05-21 | E-GEOD-8338 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Salmonella enterica serovar Typhimurium definitive phage type 104 (DT104) isolates
Salmonella enterica serovar Typhimurium (S. Typhimurium) definitive phage type 104 (DT104) has caused significant morbidity and mortality in humans and animals for almost three decades. We have completed the full DNA sequence of one DT104 strain, NCTC13348 and show that the main differences between ...
ORGANISM(S): Salmonella enterica 
2008-09-05 | E-MTAB-20 | biostudies-arrayexpress
UnknownAmerican Society of Clinical Oncology Statement: A Conceptual Framework to Assess the Value of Cancer Treatment Options.
Not available
S-EPMC5015427 | biostudies-literature
TranscriptomicsDeep sequencing of the innate immune transcriptomic response of zebrafish embryos to Salmonella infection
Salmonella enterica serovar Typhimurium (S. typhimurium) bacteria cause an inflammatory and lethal infection in zebrafish embryos. To characterize the embryonic innate host response at the transcriptome level, we have extended and validated previous microarray data by Illumina next-generation sequen...
ORGANISM(S): Danio rerio 
2010-10-25 | E-GEOD-22472 | biostudies-arrayexpress
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