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ProteomicsMicrobial functionality as affected by experimental warming of a temperate mountain forest soil - a metaproteomics survey
Soils are a huge reservoir of organic C, and the efflux of CO2 from soils is one of the largest fluxes in the global C cycle. Out of all natural environments, soils probably contain the greatest microbial biomass and diversity, which classifies them as one of the most challenging habitats for microb...
ORGANISM(S): uncultured soil microorganism 
2022-03-14 | PXD004428 | Pride
Soil microbial diversity Microbial community functionality Soil warming 
ProteomicsProteome data on soil microbial community
Soil microbial community is a complex blackbox that requires a multi-conceptual approach (Hultman et al., 2015; Bastida et al., 2016). Most methods focus on evaluating total microbial community and fail to determine its active fraction (Blagodatskaya & Kuzyakov 2013). This issue has ecological conse...
ORGANISM(S): Escherichia coli 
2021-02-02 | PXD005447 | Pride
Metaproteomics Soil Microbial community 
MetabolomicsMicrobiome network remodeling drives soil lipid metabolism under safflower cropping systems at different sites: An omics-based dissection
This study investigated the effects of three planting pattern–location combinations (PLMEs) on safflower rhizosphere soil microbiota and metabolic functions: soybean-safflower rotation at Chenghai (CH), tobacco–safflower rotation at Longpan (ZYHY), and apple orchard intercropping at Lijiang(LJ). Eac...
2026-07-22 | MTBLS15129 | MetaboLights
ProteomicsParallel protein extraction methods increase the diversity of protein identification in Park Grass Experiment soil
We have combined a modified protein extraction method, heat/thaw/phenol/chloroform (HTPC), with the established Surfactant extraction method to identify proteins from Park Grass Experiment (PGE) soil, which has an extensively sequenced microbial database.
ORGANISM(S): uncultivated soil bacterium 
2022-09-20 | PXD017392 | Pride
Lc-ms/ms Soil Enviromental proteome 
ProteomicsSoil metaproteome and pH effects
Soil microorganisms act as gatekeepers for soil-atmosphere carbon exchange by balancing the accumulation and release of soil organic matter. However, poor understanding of the mechanisms responsible hinders the development of effective land management strategies to enhance soil carbon storage. Here ...
ORGANISM(S): Escherichia coli 
2018-07-26 | PXD010526 | Pride
Soil metaproteome Ph effects Land use Lc-ms/ms 
ProteomicsSoil Metaproteome - proteome data analysis
Phosphorus (P) limitation will play a key role in the productivity of agriculture in the coming decades. Struvite is an ammonium magnesium phosphate mineral that can be recovered from wastewater-treatment plants and can be considered as an alternative source of P. However, the impact of struvite on ...
ORGANISM(S): Escherichia coli 
2019-03-13 | PXD009595 | Pride
Lc-ms Agriculture Soil microbiome 
ProteomicsWetland soil incubation treated with sulfate and oxygen
To unravel complex dynamics of environmental disturbance and microbial metabolic activities, we set up laboratory microcosms to investigate the effects of SO42- and O2 alone or in combination on microbial activities and interactions, as well as the resulting fate of carbon within wetland soil. We us...
ORGANISM(S): soil metagenome 
2024-05-19 | PXD047453 | Pride
Soil microbiome Lc-ms/ms 
ProteomicsSoil Metaproteomics - The active microbial diversity drives ecosystem multifunctionality and is physiologically related to carbon availability in Mediterranean semi-arid soils
The availability of organic carbon represents a major bottleneck for the development of soil microbial communities and the regulation of microbially-mediated ecosystem processes. However, there is still a lack of knowledge on how the lifestyle and population abundances are physiologically regulated ...
ORGANISM(S): soil bacterium 10G-05 
2017-07-07 | PXD003572 | Pride
Soil Metaproteomics Dryland 
TranscriptomicsMicroarray analysis of high Arctic soil bacterial response to hydrocarbon pollution and bioremediation: 16S rRNA
High Arctic soils have low nutrient availability, low moisture content and very low temperatures and, as such, they pose a particular problem in terms of hydrocarbon bioremediation. An in-depth knowledge of the microbiology involved in this process is likely to be crucial to understand and optimize ...
ORGANISM(S): Bacteria 
2010-06-19 | E-GEOD-17532 | biostudies-arrayexpress
TranscriptomicsMicroarray analysis of high Arctic soil bacterial response to hydrocarbon pollution and bioremediation: genomic DNA
High Arctic soils have low nutrient availability, low moisture content and very low temperatures and, as such, they pose a particular problem in terms of hydrocarbon bioremediation. An in-depth knowledge of the microbiology involved in this process is likely to be crucial to understand and optimize ...
ORGANISM(S): Escherichia coli 
2010-05-15 | E-GEOD-17517 | biostudies-arrayexpress
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