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MetabolomicsPROMIS, global analysis of PROtein-Metabolite Interactions using Size separation in Arabidopsis thaliana
Small molecules not only represent cellular building blocks and metabolic intermediates, but also regulatory ligands and signaling molecules that interact with proteins. Although these interactions affect cellular metabolism, growth, and development, they have been largely understudied. Herein, we d...
2018-07-19 | MTBLS94 | MetaboLights
ProteomicsDiscovery of Regulatory Complexes in Arabidopsis via Protein–Metabolite Mapping During Pseudomonas Infection
Protein–metabolite interactions (PMIs) are critical regulators of cellular processes, yet their roles in plant–pathogen interactions remain poorly understood. Here, we applied PROMIS (Protein–Metabolite Interactions using Size separation) to map the Arabidopsis interactome during infection with Pseu...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) Pseudomonas syringae pv. tomato str. DC3000 Bacteria 
2026-05-05 | PXD069625 | Pride
Nata1 Promis Protein-metabolite interactions 
ProteomicsIdentification and characterization of the heat-induced plastidial stress granules-like foci in Arabidopsis thaliana.
Plant cells, similar to animal cells repress translation under stressful conditions which leads to formation of cytosolic stress granules (SGs). Here, we report that in addition to cytosolic SGs plants also have plastidial SGs (pSGs). In order isolate and determine protein and metabolite composition...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2020-09-24 | PXD018348 | Pride
Stress granules Arabidopsis thaliana Co-ip Interactions Ap_ms Snowy cotyledon 1. stress treatment 
ProteomicsMulti-omics analysis of early leaf development in Arabidopsis thaliana.
The growth of plant organs is driven by cell division and subsequent cell expansion. The transition from proliferation into expansion is critical for the final organ size and, consequently plant yield. Exit from proliferation and onset of expansion is accompanied by major metabolic reprogramming, an...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2021-09-09 | PXD019545 | Pride
12-opda Proteomics Metabolomics Mitotic arrest Leaf development 
ProteomicsA multi-OMICs approach sheds light on the higher yield phenotype and enhanced abiotic stress tolerance in tobacco lines expressing the carrot lycopene β-cyclase1 gene
Here, we combine OMICs (RNAseq, proteomics, and metabolomics) approaches to advance our understanding of the broader effect of LCYB expression on the tobacco genome and metabolism. DcLCYB1 gene with accelerated development, increased carotenoid content, photosynthetic efficiency, and yield might be ...
ORGANISM(S): Nicotiana tabacum (Common tobacco) 
2021-09-10 | PXD023595 | Pride
High light and salt stress Omics Β-carotene Ros Nicotiana tabacum cv xanthi Lycopene β-cyclase Transcription factors Carotenoids 
ProteomicsDynamic maps of protein-protein-metabolite complexes in S. cerevisiae
The project aims to create dynamic maps of protein-protein-metabolite complexes in S. cerevisiae across growth phases using PROMIS (PROtein–Metabolite Interactions using Size separation). It is a biochemical, untargeted, proteome- and metabolome-wide method to study protein-protein and protein–metab...
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2022-10-25 | PXD026639 | Pride
Protein-metabolite complexes Ligand Protein-protein complexes 
ProteomicsNtabacum - Leaf, iBAQ (Morenoetal,frontplantsci2021)
abundance based on iBAQ, Interaction consistency score: 12.6, Coverage: 16
ORGANISM(S): 4097 
2021-00-00 | 1689759783 | PAXDB
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