Song Pan P - OmicsDI

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Unknown (816)
Transcriptomics (26)
Genomics (18)
Proteomics (17)
Metabolomics (8)

Organisms

Homo sapiens (35)
Mus musculus (10)
Macaca mulatta (5)
Viruses (1)
Sus scrofa (1)
Dendrobium huoshanense (1)
Zea mays (1)
Taxillus chinensis (1)
metagenomes (1)

Repository

biostudies-arrayexpress (43)
MetaboLights (8)
pride (7)
iProX (5)
MassIVE (5)
EGA (1)

Tissue

Cell culture (1)
Epithelial cell (1)
HEK-293T cell (1)
Hepatocyte (1)
Liver (1)
Plant cell (1)
Seed (1)
Stem cell (1)

Disease

Acute leukemia (1)
Disease free (1)
Non-alcoholic steatohepatitis (1)

Technology Type

Mass Spectrometry (7)
Mass spectrometry (4)
Mass spectrometry assay (4)
Shotgun proteomics (3)
Bottom-up proteomics (2)
Affinity purification coupled with mass spectrometry proteomics (1)
Proteogenomics (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (5)
Liquid Chromatography MS - positive - reverse phase (5)
Q Exactive Plus (4)
Illumina NovaSeq 6000 (3)
Liquid Chromatography MS - negative - reverse-phase (2)
Liquid Chromatography MS - positive - reverse-phase (2)
Orbitrap Fusion Lumos (1)
Liquid Chromatography MS - alternating - hilic (1)

Publication Date

2011 (12)
2015 (9)
2010 (9)
2025 (7)
2026 (5)
2022 (4)
2012 (3)
2020 (3)
2016 (2)
2014 (2)
2009 (2)
2023 (2)
2018 (2)
2024 (2)
2013 (1)

CHEBI ID

CHEBI:15741 (2)
CHEBI:15918 (2)
CHEBI:15971 (2)
CHEBI:16027 (2)
CHEBI:16264 (2)
CHEBI:16283 (2)
CHEBI:16680 (2)
CHEBI:16977 (2)
CHEBI:17202 (2)
CHEBI:17964 (2)
CHEBI:18344 (2)
CHEBI:32805 (2)
CHEBI:9410 (2)
CHEBI:10072 (1)
CHEBI:113542 (1)
CHEBI:132223 (1)
CHEBI:136629 (1)
CHEBI:137157 (1)
CHEBI:138426 (1)
CHEBI:138517 (1)
CHEBI:138522 (1)
CHEBI:139131 (1)
CHEBI:140999 (1)
CHEBI:141521 (1)
CHEBI:143251 (1)
CHEBI:145278 (1)
CHEBI:15346 (1)
CHEBI:15350 (1)
CHEBI:15351 (1)
CHEBI:15354 (1)

Metabolite Name

2-Aminopurine (3)
Adenine (3)
Aniline (3)
Choline (3)
Diethanolamine (3)
Hypoxanthine (3)
L-Histidine (3)
L-Proline (3)
Lauramine Oxide (3)
Uracil (3)
Urocanic Acid (3)
((4-(4-Amidinophenoxy)Butanoyl)Aspartyl)Valine (2)
(-)-Arctigenin (2)
1-Acetylpiperidine (2)
10-Hydroxyundecanoylcarnitine (2)
11-Aminoundecanoic Acid (2)
15-Methylpalmitate (2)
16-Hydroxy-10-Oxohexadecanoic Acid (2)
2',3'-Dideoxyadenosine (2)
2-Hydroxycinnamic Acid (2)
2-Hydroxypyridine (2)
2-Pyrrolino-Dox (2)
3',4'-Dihydroxyphenylacetone (2)
3,6,9,12,15,18,21,24,27,30-Decaoxadotriacontane-1,32-Diol (2)
3-(3-Amino-3-Carboxypropyl)Uridine (2)
3-Acetyl-2,5-Dimethylfuran (2)
3-Amino-3-(4-Hydroxyphenyl)Propanoate (2)
3-Dehydrosphinganine (2)
3-Methyl-1-Butylamine (2)
4-Heptylphenol (2)

Study type

Transcription profiling by array (16)
ChIP-seq (15)
RNA-seq of coding RNA (5)
Methylation profiling by high throughput sequencing (2)
ChIP-chip by tiling array (1)
Comparative genomic hybridization by array (1)
Other (1)
Methylation profiling by array (1)
RNA-seq of non coding RNA (1)

Release Date

2025 (125)
2023 (125)
2022 (115)
2024 (107)
2021 (92)
2020 (63)
2019 (40)
2017 (33)
2015 (29)
2016 (22)
2026 (21)
2018 (20)
2011 (16)
2014 (14)
2013 (12)
2010 (10)
2012 (9)
2009 (3)
2008 (1)
2007 (1)
2005 (1)

Lab affiliation

Center for Cell Lineage and Development, CAS Key Laboratory of Regenerative Biology, Guangdong Provincial Key Laboratory of Stem Cell and Regenerative Medicine, GIBH-HKU Guangdong-Hong Kong Stem Cell and Regenerative Medicine Research Centre, Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences, Guangzhou, China. (1)
Chinese Academy of Sciences Shanghai Institute of Materia Medica (1)
Department of Cardiology, Renmin Hospital of Wuhan University, Wuhan 430060, China (1)
Guangxi Botanical Garden of Medicinal Plant, Nanning, China (1)
Ministry of Education International Joint Laboratory of Ocular Diseases, Tianjin Key Laboratory of Ocular Trauma, Tianjin Institute of Eye Health and Eye Diseases, China-UK "Belt and Road" Ophthalmology Joint Laboratory, Tianjin Medical University General Hospital (1)
Oak Ridge National Lab (1)
State Key Laboratory of Oncology in South China, Guangdong Provincial Clinical Research Center for Cancer, Sun Yat-sen University Cancer Center, Guangzhou 510060, China (1)

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Gene expression profiling of histone deacetylase inhibition in epithelioid sarcoma

Epithelioid Sarcoma (ES) is a rare neoplasm uniquely comprised of cells exhibiting both mesenchymal and epithelial features. Having propensity for local and distant recurrence, it can pose a diagnostic dilemma secondary to pathologic complexity. Patients have dismal prognosis due to lack of effectiv...

ORGANISM(S): Homo sapiens

2015-11-03 | E-GEOD-66800 | biostudies-arrayexpress

Subsets of visceral adipose tissue nuclei with discrete levels of 5-hydroxymethylcytosine

We explored the hypothesis that adipose tissue contains epigenetically distinct subpopulations of adipocytes that are differentially potentiated to record cellular memories of their environment. Adipocytes are large, fragile, and technically difficult to efficiently isolate and fractionate. We devel...

ORGANISM(S): Sus scrofa

2016-07-20 | E-GEOD-73684 | biostudies-arrayexpress

Pan-cancer analysis uncovered the prognostic and therapeutic value of disulfidptosis.

Not available

S-EPMC11850913 | biostudies-literature

Comprehensive evaluation of the prevalent insulin resistance indices for pan-cancer incidence and mortality prediction.

Not available

S-EPMC12781529 | biostudies-literature

A Pan-Cancer Analysis of the Oncogenic Role of WD Repeat Domain 74 in Multiple Tumors.

Not available

S-EPMC9086290 | biostudies-literature

Interaction between ENPP1 and homologous recombination deficiency defines distinct pan-cancer signatures: A retrospective observational study.

Not available

S-EPMC12778157 | biostudies-literature

Global epigenomic analysis of primary human pancreatic islets provides insights into type 2 diabetes susceptibility loci

Identifying cis-regulatory elements is important to understand how human pancreatic islets modulate gene expression in physiologic or pathophysiologic (e.g., diabetic) conditions. We conducted genome-wide analysis of DNase I hypersensitive sites, histone H3 lysine methylation marks (K4me1, K4me3, K7...

ORGANISM(S): Homo sapiens

2010-11-02 | E-GEOD-23784 | biostudies-arrayexpress

The role of toll-like receptors (TLRs) in pan-cancer.

Not available

S-EPMC9272932 | biostudies-literature

ESCRT may function as a tumor biomarker, transitioning from pan-cancer analysis to validation within breast cancer.

Not available

S-EPMC11994712 | biostudies-literature

Cell type specificity of chromatin organization mediated by CTCF and cohesin

CTCF sites are abundant in the genomes of diverse species but their function is enigmatic. We used chromosome conformation capture to determine long-range interactions among CTCF/cohesin sites over 2 Mb on human chromosome 11 encompassing the β-globin locus and flanking olfactory receptor genes. Alt...

ORGANISM(S): Homo sapiens

2011-01-13 | E-GEOD-26507 | biostudies-arrayexpress

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