Sonication-free

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Proteomics (567)
Transcriptomics (174)
Genomics (152)
Unknown (108)
Metabolomics (12)
Other (1)

Organisms

Homo sapiens (90)
Mus musculus (84)
Drosophila melanogaster (56)
Saccharomyces cerevisiae (10)
Listeria monocytogenes (6)
Escherichia coli (5)
Arabidopsis thaliana (5)
Streptomyces coelicolor A3(2) (3)
Schizosaccharomyces pombe (3)
Pseudomonas putida (3)
Escherichia coli str. K-12 substr. MG1655 (3)
Streptococcus mutans UA159 (2)
Streptomyces coelicolor (2)
Danio rerio (2)
Anabaena (1)
Camponotus floridanus (1)
Salmonella enterica (1)
Bombyx mori (1)
Dictyostelium discoideum (1)
Haloferax volcanii (1)
Mus caroli (1)
Herbaspirillum seropedicae (1)
Trypanosoma brucei brucei (1)
Halobacterium salinarum (1)
Drosophila ananassae (1)
Porphyromonas gingivalis (1)
Zea mays (1)
Mycobacterium tuberculosis (1)
Streptomyces venezuelae (1)
Bos taurus (1)

Organisms

Homo sapiens (9)
Mus musculus (4)
Saccharomyces cerevisiae (2)
Antigone vipio (1)
Grus monacha (1)
Haliaeetus albicilla (1)
Nisaetus nipalensis (1)
Dendrocopos noguchii (1)
Scolopax mira (1)
Bubo blakistoni (1)
Lagopus muta japonica (1)
Aquila chrysaetos japonica (1)
Astur gentilis (1)
Accipiter nisus (1)
Falco peregrinus (1)
Escherichia coli (1)

Repository

pride (538)
biostudies-arrayexpress (287)
ENA (36)
jPOST (19)
MetaboLights (10)
MassIVE (9)
geo (3)
GNPS (2)
EGA (1)
iProX (1)
NODE (1)

Tissue

Cell culture (116)
Epithelial cell (44)
Brain (42)
Blood (16)
Liver (16)
Whole body (14)
Kidney (12)
Permanent cell line cell (12)
B cell (11)
Cell suspension culture (11)
Fibroblast (11)
Lung (11)
Blood cell (10)
Colon (10)
HeLa cell (10)
Heart (10)
Hepatocyte (10)
Blood plasma (9)
Skin (9)
Blood serum (8)
Embryonic stem cell (8)
T cell (8)
Skeletal muscle (7)
Leukocyte (6)
Stem cell (6)
Keratinocyte (5)
Macrophage (5)
Melanocyte (5)
Primary cell (5)
Prostate (1)

Disease

Disease free (17)
Breast cancer (15)
Acute leukemia (13)
Colon cancer (7)
Lymphoma (5)
Melanoma (5)
Cervix carcinoma (4)
Crohn's disease (4)
Infertility (4)
Multiple sclerosis (4)
Trypanosomiasis (4)
Hepatocellular carcinoma (3)
Lung cancer (3)
Malaria (3)
Malignant neoplasm of ovary (3)
Non-small cell lung carcinoma (3)
Type 2 diabetes mellitus (3)
Ulcerative colitis (3)
Normal (2)
Alzheimer's disease (2)
Bacterial infectious disease (2)
Brain cancer (2)
Chronic lymphocytic leukemia (2)
Gonorrhea (2)
Inflammatory bowel disease (2)
Miscarriage (2)
Pancreatic ductal adenocarcinoma (2)
Parkinson's disease (2)
Malignant glioma (1)
Post-stasis (1)

Technology Type

Mass Spectrometry (538)
Shotgun proteomics (288)
Bottom-up proteomics (116)
Affinity purification coupled with mass spectrometry proteomics (70)
Data-dependent acquisition (68)
Data-independent acquisition (32)
SWATH MS (32)
Gel-based experiment (29)
Top-down proteomics (13)
Chemical cross-linking coupled with mass spectrometry proteomics (11)
Mass spectrometry (9)
Affinity proteomics (5)
All-ion fragmentation (3)
HDMSE (3)
DiaPASEF (2)
NMR spectroscopy (1)
Mass spectrometry assay (1)
SRM/MRM (1)

Instrument Platform

Illumina NovaSeq 6000 (8)
Illumina HiSeq 2000 (7)
NextSeq 500 (7)
Illumina HiSeq 2500 (6)
Illumina HiSeq 4000 (5)
Orbitrap Exploris 480 (3)
Gas Chromatography MS - positive (3)
Axon GenePix4000B (2)
GenePix 4000A [Axon Instruments] (2)
Illumina Genome Analyzer IIx (2)
Axon- GenePix4000B (2)
Illumina Genome Analyzer II (2)
NextSeq 550 (2)
Illumina HiSeq 3000 (2)
LTQ (2)
Capillary electrophoresis MS - negative (2)
Axon GenePix 4000A scanning hardware (1)
NanoDrop (1)
G2565BA DNA microarray scanner [Agilent] (1)
Illumina NovaSeq X (1)
Illumina MiniSeq (1)
Illumina HiSeq 1000 (1)
Illumina MiSeq (1)
MaXis (1)
MicrOTOF II (1)
MicrOTOF-Q II (1)
Orbitrap Ascend (1)
Q Exactive (1)
Q Exactive Plus (1)
TimsTOF fleX (1)

Publication Date

2025 (103)
2024 (90)
2022 (76)
2023 (60)
2026 (58)
2015 (56)
2021 (52)
2013 (52)
2011 (46)
2019 (44)
2020 (40)
2016 (38)
2018 (34)
2014 (34)
2017 (22)
2012 (19)
2010 (16)
2008 (8)
2007 (6)
2009 (5)
2006 (5)
2005 (4)

CHEBI ID

CHEBI:16958 (5)
CHEBI:17497 (5)
CHEBI:17568 (5)
CHEBI:30769 (5)
CHEBI:30813 (4)
CHEBI:15901 (4)
CHEBI:30805 (4)
CHEBI:32368 (4)
CHEBI:26271 (4)
CHEBI:25094 (4)
CHEBI:17230 (4)
CHEBI:22653 (4)
CHEBI:16811 (4)
CHEBI:28300 (4)
CHEBI:18257 (4)
CHEBI:30832 (4)
CHEBI:28842 (4)
CHEBI:15428 (4)
CHEBI:16610 (4)
CHEBI:15741 (4)
CHEBI:30746 (4)
CHEBI:17821 (4)
CHEBI:17154 (4)
CHEBI:15940 (4)
CHEBI:17509 (4)
CHEBI:7916 (4)
CHEBI:17084 (4)
CHEBI:4047 (4)
CHEBI:28837 (4)
CHEBI:16704 (4)

Metabolite Name

Spermidine (3)
2-Oxoadipate (2)
DCDP (2)
5-Methylthioadenosine (2)
S-Lactoylglutathione (2)
DTDP (2)
Glucosamine 6-phosphate (2)
3-Methyl-2-oxovaleric acid (2)
Glycine (2)
Uracil (2)
CDP (2)
AICAR (2)
5-Methoxyindoleacetate (2)
Sepiapterin (2)
Ornithine (2)
Purine (2)
Nicotinamide (2)
Stearic acid (2)
Guanine (2)
Sarcosine (2)
Palmitic acid (2)
Creatine (2)
L-Isoleucine (2)
L-Tyrosine (2)
L-Phenylalanine (2)
Hypoxanthine (2)
4-Allyl-1,2-diacetoxybenzene (1)
Chavibetol acetate (1)
Chavibetol (1)
Chavicol acetate (1)

First Public Date

2019 (13)
2026 (4)
2022 (3)
2020 (3)
2025 (2)
2024 (2)
2023 (2)
2017 (2)
2014 (2)
2021 (1)
2016 (1)
2013 (1)

Classification

bacteria (1)

Modification

4x(15)N labeled L-arginine (3)
+3amu) (2)
15.994915 (2)
57.021464 (2)
15.99491 (1)
27.994915 (1)
2x(15)N labeled L-lysine (1)
4'-dihydroxyphenylalanine (1)
4-tetrahydrothiazine-3-carboxylic acid (1)
42.010565 (1)
45.029395 (1)
57.02146 (1)
58.005479 (1)
N6-dimethyl-L-lysine (1)
Not available (1)

Study type

ChIP-seq (95)
ChIP-chip by tiling array (44)
Transcription profiling by array (44)
RNA-seq of coding RNA (33)
ChIP-chip by array (21)
Methylation profiling by high throughput sequencing (15)
Other (9)
Methylation profiling by array (6)
Cell line - High-throughput sequencing (3)
RNA-seq of total RNA (3)
Transcription profiling by tiling array (2)
Comparative genomic hybridization by array (2)
DNA-seq (2)
RNA-seq of non coding RNA (2)
Human - High-throughput sequencing (1)
MBD-seq (1)
Transcription profiling by RT-PCR (1)
MicroRNA profiling by high throughput sequencing (1)
Hi-C (1)

Release Date

2013 (50)
2011 (46)
2015 (45)
2014 (34)
2016 (27)
2023 (20)
2022 (20)
2012 (18)
2025 (17)
2021 (17)
2019 (17)
2010 (16)
2020 (11)
2024 (8)
2008 (8)
2018 (7)
2017 (7)
2026 (6)
2009 (6)
2007 (6)
2006 (5)
2005 (3)
2003 (1)

Lab affiliation

School of Life Sciences, Central China Normal University, Wuhan, Hubei province, China (13)
Department of Biology, Institute of Microbiology, ETH Zürich, Switzerland (4)
Department of Chemistry, Imperial College London, Molecular Sciences Research Hub, London, W12 0BZ, UK The Francis Crick Institute, London, NW1 1AT, UK (4)
Proteomics, Leibniz-Institut für analytische Wissenschaften -ISAS - e.V., Germany (4)
Department of Synthetic Chemistry & Biological Chemistry, Graduate School of Engineering, Kyoto Univ. Katsura, Kyoto 615-8510, JAPAN (3)
Molecular Oncology Chemical Biology and Molecular Medicine Moffitt Cancer Center (3)
Proteomics Center, Erasmus MC (3)
The University of Sydney (3)
Université Paris-Saclay, INRAE, Univ Paris-Sud, CNRS, AgroParisTech, GQE - Le Moulon, 91190, Gif-sur-Yvette, France (3)
Vividion Therapeutics (3)
Wageningen University (3)
Whitehead Institute and MIT (3)
1Department of Biology, National and Kapodistrian University of Athens, Panepistimioupolis, Athens, 15784, Greece. 2Institute of Molecular Biology and Biotechnology, Foundation for Research and Technology, Heraklion, 70013, Greece. (2)
Acupuncture and Tuina School/Third Teaching Hospital, Chengdu University of Traditional Chinese Medicine (2)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands (2)
Chair of Biochemistry II, Theodor Boveri-Institute, Biocenter, University of Würzburg, Würzburg, Germany (2)
Department of Chemical and Physical Sciences, University of Toronto Mississauga, Mississauga, Canada (2)
Department of Pharmaceutical Sciences, College of Pharmacy, Oregon State University, Corvallis, Oregon 97331, USA (2)
Department of Systems Immunology, Weizmann Institute of Science, Rehovot, Israel (2)
Donnelly Centre for Cellular and Biomolecular Research, Department of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada (2)
EDyP (2)
Faculty of Dentistry, The University of Hong Kong (2)
Functional Proteomics, ICR (2)
Human Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, NY, United States (2)
ICM, Molecular Evolution, Uppsala University (2)
IMol Polish Academy of Sciences, Warsaw, Poland (2)
Institute for Microbiology, University of Greifswald, Felix-Hausdorff-Straße 8, 17489 Greifswald, Germany (2)
Institute of Lung Biology and Disease and Comprehensive Pneumology Center, Helmholtz Zentrum München, Member of the German Center for Lung Research (DZL), Munich, German (2)
Institute of Physiology II Universität Freiburg Germany (2)
Instituto de Ciencia y Tecnologia Animal Universitat Politècnica de València Valencia, Spain (2)

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ASAP – Automated Sonication free Acid assisted Proteomes from cells & FFPE tissues

Formalin-fixed, paraffin-embedded (FFPE) tissues are an invaluable resource for retrospective studies but protein extraction and subsequent sample processing steps have shown to be challenging for mass spectrometry (MS) analysis. Streamlined high-throughput sample preparation workflows are essential...

ORGANISM(S): Homo sapiens (Human)

2024-05-21 | PXD036910 | Pride

Complex Dependence of Escherichia coli-based Cell-Free Expression on Sonication Energy During Lysis.

Not available

S-EPMC10594866 | biostudies-literature

Free-Radical Membrane Protein Footprinting by Photolysis of Perfluoroisopropyl Iodide Partitioned to Detergent Micelle by Sonication.

Not available

S-EPMC8083173 | biostudies-literature

ASAP─Automated Sonication-Free Acid-Assisted Proteomes─from Cells and FFPE Tissues.

Not available

S-EPMC9933881 | biostudies-literature

Sonication-Free Dispersion of Single-Walled Carbon Nanotubes for High-Sorption-Capacity Aerogel Fabrication.

Not available

S-EPMC9658345 | biostudies-literature

A mild and efficient method for the synthesis of pyrroles using MIL-53(Al) as a catalyst under solvent-free sonication.

Not available

S-EPMC9062010 | biostudies-literature

One-pot universal NicE-seq: All enzymatic downstream processing of 4% formaldehyde crosslinked cells for chromatin accessibility genomics

Accessible chromatin landscape allows remodeling of transcription factors and enhancers during development and molecular subtypes of cancer in patient samples. One-tube universal NicE-seq (OuNicE-seq) is an improved accessible chromatin profiling method that negate DNA purification and incorporate s...

ORGANISM(S): Homo sapiens

2021-12-01 | GSE175651 | GEO

A green approach for the synthesis of 2-substituted benzoxazoles and benzothiazoles via coupling/cyclization reactions.

Not available

S-EPMC8601991 | biostudies-literature

An Efficient Passerini Tetrazole Reaction (PT-3CR).

Not available

S-EPMC5102161 | biostudies-literature

Enzymatic protection and biocompatibility screening of enzyme-loaded polymeric nanoparticles for neurotherapeutic applications.

Not available

S-EPMC7442737 | biostudies-literature

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1015 Results

Show results for

Organisms

Organisms

Repository

Tissue

Disease

Technology Type

Instrument Platform

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CHEBI ID

Metabolite Name

First Public Date

Classification

Modification

Study type

Release Date

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