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MetabolomicsIntegrative analysis of metabolome and transcriptome reveals new insights into formation and regulation of major components of G. leucocontextum and G. lucidum

Ganoderma is a class of medicinal fungi with diverse medicinal effects, of which triterpenoids are one of the main pharmacologically active substances. In this study, sporocarps of two Ganoderma species (G. leucocontextum, a newly discovered species, and G. lucidum, a traditional medicinal specie...

2026-02-08 | MTBLS13871 | MetaboLights
ProteomicsProteome of the Apogamous Fern Dryopteris affinis ssp. affinis
Performing proteomic studies on non-model organisms with little or no genomic information is still difficult. However, many specific processes and biochemical pathways occur only in species that are poorly characterized at the genomic level. For example, many plants can reproduce both sexually and a...
ORGANISM(S): Dryopteris affinis subsp. affinis 
2017-04-11 | PXD005423 | Pride
Plant proteomics Orbitrap lc-msms Species-specific transcriptome database Rna-seq database Fern Dryopteris affinis ssp. affinis 
ProteomicsTissue-based mapping of the fathead minnow (Pimephales promelas) transcriptome and proteome
Omics approaches are broadly used to explore endocrine and toxicity-related pathways and functions. Nevertheless, there is still a significant gap in knowledge in terms of understanding the endocrine system and its numerous connections and intricate feedback loops, especially in non-model organisms....
ORGANISM(S): Pimephales promelas 
2018-10-15 | PXD010216 | Pride
Transcriptome Tissue-specific Endocrine system Proteome Fathead minnows 
TranscriptomicsSRA of transcriptome of Hevea brasiliensis
We first report the use of next-generation massively parallel sequencing technologies and de novo transcriptome assembly to gain insight into the wide range of transcriptome of Hevea brasiliensis. The output of sequenced data showed that more than 12 million sequence reads with average length of 90n...
ORGANISM(S): Hevea brasiliensis 
2011-09-01 | E-GEOD-26514 | biostudies-arrayexpress
TranscriptomicsSpatio-temporal transcriptome of the human brain
The development of the human brain is a complex and precisely regulated process that unfolds over a protracted period of time. Human-specific features of this process, especially the ways in which highly complex neural circuits of the cerebral cortex form, are likely to be important factors in the e...
ORGANISM(S): Homo sapiens 
2011-10-26 | E-GEOD-25219 | biostudies-arrayexpress
UnknownTRAM (Transcriptome Mapper): database-driven creation and analysis of transcriptome maps from multiple sources.
Not available
S-EPMC3052188 | biostudies-literature
UnknownPharmOmics: A species- and tissue-specific drug signature database and gene-network-based drug repositioning tool.
Not available
S-EPMC8957031 | biostudies-literature
TranscriptomicsTranscriptome analysis reveals season-specific RbcS gene expression profiles in diploid Lolium perenne L.
Perennial ryegrass (Lolium perenne L.) is a major grass species used for forage and turf throughout the world, and gains by conventional breeding have reached a plateau. Perennial ryegrass is an outcrossing, self-incompatible diploid (2n = 2x = 14) with a relatively large genome (4067 Mbp/diploid ge...
ORGANISM(S): Lolium perenne 
2006-11-08 | E-GEOD-5211 | biostudies-arrayexpress
UnknownMeta-analysis of muscle transcriptome data using the MADMuscle database reveals biologically relevant gene patterns.
Not available
S-EPMC3049149 | biostudies-literature
TranscriptomicsS. coelicolor Wild Type Time-course Study in R5- medium (Culture#1)
Antibiotic biosynthesis in Streptomyces species is controlled by a complex genetic and biochemical network of global and pathway specific regulators. Details of their precise interactions in mediating temporal and spatial expression of secondary metabolite genes remain poorly defined. In this stud...
ORGANISM(S): Streptomyces coelicolor 
2010-06-10 | E-GEOD-8084 | biostudies-arrayexpress
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