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Unknown (8604)
Transcriptomics (5103)
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Proteomics (426)
Metabolomics (77)
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Methylation profiling (11)
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Organisms

Homo sapiens (1476)
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Saccharomyces cerevisiae (247)
Arabidopsis thaliana (148)
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Caenorhabditis elegans (66)
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synthetic construct (20)
Salvelinus leucomaenis (1)
Oncorhynchus masou masou (1)

Organisms

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viral metagenome (56)
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soil metagenome (21)
Alternaria alternata (15)
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Rattus norvegicus (15)
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Zygaena filipendulae (8)
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marine metagenome (8)
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synthetic construct (8)
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Pseudomonas syringae pv. actinidifoliorum (6)
Lasiodiplodia theobromae (6)
Agonopterix alstromeriana (6)
Cicer arietinum (6)
Xestia triangulum (6)
Didymella segeticola (5)
Xanthomonas citri pv. mangiferaeindicae (5)

Repository

biostudies-arrayexpress (5000)
ENA (1701)
pride (296)
geo (287)
MetaboLights (71)
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EGA (16)
jPOST (14)
iProX (9)
GNPS (5)
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PeptideAtlas (1)

Tissue

Cell culture (32)
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Disease

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Myelolipoma (1)

Technology Type

Mass Spectrometry (297)
Gel-based experiment (147)
Shotgun proteomics (96)
Mass spectrometry (54)
Bottom-up proteomics (24)
Top-down proteomics (20)
Mass spectrometry assay (14)
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NMR spectroscopy (5)
Chemical cross-linking coupled with mass spectrometry proteomics (5)
SWATH MS (5)
Fluorescence intensity (3)
Microwestern (3)
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SRM/MRM (2)
Illumina (various), Illumina (Various) (1)
EI (1)
ESI (1)
Glycoproteomics (1)
HDMSE (1)
Two Dimensional Polyacrylamide Gel Electrophoresis (1)

Instrument Platform

Axon GenePix 4000B scanning hardware (24)
GenePix 4000B [Axon Instruments] (19)
GenePix 4000A [Axon Instruments] (15)
ScanArray Express HT [PerkinElmer] (14)
Illumina NovaSeq 6000 (12)
NextSeq 500 (12)
Axon- GenePix4000B (11)
ScanArray 4000 [PerkinElmer] (10)
Scanning hardware (10)
Other (8)
Illumina HiSeq 2000 (8)
ArrayWoRx Biochip Reader [Applied Precision] (7)
Generation III Array Scanner [Amersham] (7)
ScanArray Lite [PerkinElmer] (6)
GenePix Personal 4100A [Axon Instruments] (6)
G2565BA DNA microarray scanner [Agilent] (6)
ScanArray 5000 [PerkinElmer] (5)
Illumina HiSeq 2500 (5)
Illumina HiSeq 4000 (5)
Axon GenePix 4000A scanning hardware (4)
ScanArray scanning hardware (4)
418 [Affymetrix] (4)
Microcentrifuge (3)
Agilent G2565BA (3)
428 [Affymetrix] (3)
DNA Microarray Scanner BA [Agilent Technologies] (3)
FUJIFILM BAS-5000 scanning hardware (2)
BAS-1800 [FUJIFILM] (2)
GenePix Professional 4200A [Axon Instruments] (2)
G2565AA DNA microarray scanner [Agilent] (2)

Publication Date

2010 (1400)
2011 (509)
2012 (491)
2013 (464)
2008 (368)
2014 (349)
2009 (291)
2015 (255)
2005 (227)
2007 (225)
2006 (189)
2016 (177)
2022 (100)
2004 (77)
2021 (73)
2023 (69)
2019 (66)
2026 (65)
2025 (65)
2017 (59)
2018 (55)
2020 (53)
2024 (50)
2003 (17)
2002 (11)
2001 (2)

CHEBI ID

CHEBI:62959 (1)
CHEBI:62958 (1)
CHEBI:32797 (1)
CHEBI:380 (1)
CHEBI:11036 (1)
CHEBI:16782 (1)
CHEBI:18739 (1)
CHEBI:18738 (1)
CHEBI:62621 (1)
CHEBI:26638 (1)
CHEBI:47569 (1)
CHEBI:9098 (1)
CHEBI:27277 (1)
CHEBI:30816 (1)
CHEBI:46315 (1)
CHEBI:27278 (1)
CHEBI:15301 (1)
CHEBI:9933 (1)
CHEBI:16632 (1)
CHEBI:46497 (1)
CHEBI:46502 (1)
CHEBI:36272 (1)
CHEBI:30518 (1)
CHEBI:36271 (1)
CHEBI:26894 (1)
CHEBI:9474 (1)
CHEBI:45729 (1)
CHEBI:27902 (1)
CHEBI:71392 (1)
CHEBI:77932 (1)

Metabolite Name

Taurine (8)
Adenine (8)
Guanosine (8)
L-Tyrosine (8)
Hypoxanthine (8)
Carnosine (7)
Spermidine (7)
Creatinine (7)
L-Phenylalanine (7)
Creatinine (6)
Betaine (6)
L-Histidine (6)
Citric acid (6)
Adenosine (6)
Histamine (6)
L-Glutamine (6)
Creatine (6)
Hypoxanthine (5)
Tyrosine (5)
Alanine (5)
Glycine (5)
L-Lysine (5)
L-Aspartic acid (5)
L-Proline (5)
7-Methylguanine (5)
Putrescine (5)
Dopamine (5)
L-Ornithine (5)
L-Threonine (5)
Serotonin (5)

First Public Date

2014 (381)
2025 (173)
2026 (172)
2024 (156)
2022 (127)
2023 (126)
2021 (119)
2018 (117)
2020 (81)
2019 (61)
2017 (59)
2013 (57)
2016 (35)
2015 (35)
2011 (1)
2010 (1)

Modelling Approach

Dynamical characteristic (1)
Spatial characteristic (1)
Ordinary differential equation model (1)
Constraint-based model (1)

Study status

Completed (5)
Recruiting (2)
Not yet recruiting (1)
Not provided (1)

Lab affiliation

Institute of Animal Reproduction and Food Research of Polish Academy of Sciences (6)
Microbial Evolution Laboratory, Centro de Astrobiologia (CSIC-INTA), 28850 Torrejón de Ardoz, Madrid, Spain (4)
Berlin Institute of Health at Charite, Universitaetsmedizin Berlin, Core Facility Proteomics; Max Delbrueck Center for Molecular Medicine in the Helmholtz Association (MDC), Berlin, Germany (3)
Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and BIOSS Centre for Biological Signalling Studies, University of Freiburg (3)
Department of Chemistry, Michigan State University (2)
Department of Molecular Biology and Genetics, Lab of Proteome Research, Federal Research and Clinical Centre of Physical-Chemical Medicine, Malaya Pirogovskaya 1a, Moscow, 119992, Russia (2)
Instituto de Parasitología y Biomedicina "López - Neyra", CSIC Departamento de Biología Celular e Inmunología Parque Tecnológico de Ciencias de la Salud, Avda. del Conocimiento, s/n 18016, Granada-Spain (2)
MSBioLMU Großhaderner Str. 2-4 82152 Planegg-Martinsried (2)
Staff Scientist Biological Systems & Engineering Division Lawrence Berkeley National Laboratory Berkeley CA 94720 (2)
1. Center for Integrative Brain Research, Seattle Children's Research Institute, Seattle, WA 2. Division of Cardiology, Department od=f Pediatrics, University of Washington, Seattle, WA (1)
1. Istitituto Sperimentale Italiano L. Spallanzani,Milano, Italy; 2. Dipartimento di Scienze Veterinarie e Sanità Pubblica, Università degli Studi di Milano, Milano, Italy. (1)
ARC Centre of Excellence in Synthetic Biology, School of Natural Sciences, Faculty of Science and Engineering, Macquarie University, North Ryde, Sydney, NSW 2109, Australia. (1)
ASTRE, Univ Montpellier, CIRAD, INRA, Montpellier, France + CIRAD, UMR ASTRE, F-34398, Montpellier, France (1)
Aalborg University (1)
Aalborg University Laboratory for Medical Massspectrometry (1)
Agricultural and Plant Biochemistry and Proteomics Research Group, Dept. of Biochemistry and Molecular Biology, University of Cordoba, Agrifood Campus of International Excellence (ceiA3), 14071 Cordoba, Spain (1)
Alkali Soil Natural Environmental Science Center, Northeast Forestry University, Key Laboratory of Saline-alkali Vegetation Ecology Restoration in Oil Field, Ministry of Education, Harbin 150040, China (1)
Analytical Chemistry Department, University of Barcelona (1)
Applied Veterinary Morphology, Department of Veterinary Sciences, University of Antwerp, Belgium (1)
Associate Professor, School of Biosciences, Faculty of Science, Univerisity of Nottingham Malaysia campus, Malaysia (1)
Beijing Proteome Research Center, 38 Science Park Road, Changping District, Beijing 102206, China. (1)
Biomedicine Discovery Institute, Infection Program, Department of Microbiology, Monash University, Clayton, Victoria, Australia (1)
CERELA CONICET - Argentina (Reference Center for Lactobacilli, National Scientific and Technical Research Council - Argentina) (1)
Calpain Project Department of Advanced Science for Biomolecules Igakuken (Tokyo Metropolitan Institute of Medical Science) 2-1-6 Kamikitazawa, Setagaya-ku Tokyo 156-8506, Japan (1)
Cell Structure Laboratory, National Center for Biotechnology (CNB-CSIC) (1)
Center for Genomic Regulation, Universitat Pompeu Fabra, 08003 Barcelona, Spain (1)
Center for Mass Spectrometry and Optical Spectroscopy (CeMOS), Mannheim University of Applied Sciences, Paul-Wittsack Str. 10, 68163, Mannheim, Germany. (1)
Center for Mass Spectrometry and Optical Spectroscopy (CeMOS), Mannheim University of Applied Sciences, Paul-Wittsack Str. 10, 68163, Mannheim, Germany. Mannheim Center for Translational Neuroscience (MCTN), Medical Faculty Mannheim, Heidelberg University, 69120 Heidelberg, Germany. Medical Faculty, Heidelberg University, 69120 Heidelberg, Germany. (1)
Center for Neurogenomics and Cognitive Research, VU Amsterdam De Boelelaan 1085 1081 HV Amsterdam (1)
Center for Structural Biology, Center for Cancer Research, National Cancer Institute (NCI) (1)

Keyword

Colonoscopy, chromoendoscopy, autoflurescence, narrow band imaging, high definition endoscopy, colorectal cancer, colitis, polyp, DALM, adenoma, video (1)
Postoperative insulin resistance (1)
Branched chain amino acids (1)
CÉLULAS DENDRÍTICAS AUTÓLOGAS (1)
Dendritic Cells (1)

IsPrivate

False (3)

Model Flag

Non Kinetic (1)

Submitter Keywords

FROG (1)

Classification

bacteria (78)
viruses (16)
fungi (11)
protozoa (4)
helminths (1)

Modification

57.021464 (3)
15.994915 (2)
15.99491 (1)
4-tetrahydrothiazine-3-carboxylic acid (1)
57.02146 (1)
N6 (1)

Study type

Transcription profiling by array (3618)
Unknown experiment type (675)
Comparative genomic hybridization by array (241)
Proteomic profiling by array (75)
Other (73)
ChIP-chip by array (56)
ChIP-chip by tiling array (49)
Methylation profiling by array (32)
RNA-seq of coding RNA (28)
Transcription profiling by tiling array (19)
MicroRNA profiling by array (19)
Genotyping by array (13)
ChIP-seq (13)
Spatial transcriptomics by high-throughput sequencing (12)
RNA-seq of coding RNA from single cells (9)
RNA-seq of non coding RNA (8)
RNAi profiling by array (5)
DNA-seq (5)
Animal - High-throughput sequencing (4)
Methylation profiling by high throughput sequencing (3)
Cell line - One-color microarray (2)
Human - One-color microarray (2)
Antigen profiling (2)
RNA-seq of total RNA (2)
Animal - Two-color microarray (1)
RNA-seq of non coding RNA from single cells (1)
Two-color microarray (1)
Differential (1)
Plant - Two-color microarray (1)
Animal - One-color microarray (1)

Release Date

2010 (1527)
2022 (1042)
2021 (900)
2023 (896)
2025 (774)
2024 (769)
2020 (748)
2013 (662)
2011 (651)
2012 (642)
2014 (579)
2019 (541)
2015 (539)
2016 (513)
2018 (509)
2017 (477)
2008 (418)
2009 (364)
2007 (274)
2005 (244)
2006 (225)
2026 (128)
2004 (75)
2003 (35)
2002 (35)
2001 (16)
2000 (6)
1999 (6)
1998 (5)
1997 (4)

Location

Spain (2)
Australia (2)
United Kingdom (2)
New Zealand (1)
China (1)
Italy (1)

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Comparing the transcriptomic and metabolomic responses of Scylla paramamosain and Tachypleus tridentatus to White Spot Syndrome Virus.

2026-03-25 | MTBLS14140 | MetaboLights

Imaginal disc growth factor maintains cuticle structure and controls melanization in the spot pattern formation of Bombyx mori

The complex stripes and patterns of insects play key roles in behavior and ecology. However, the fine-scale regulation mechanisms underlying pigment formation and morphological divergence remain largely unelucidated. Here we demonstrated that imaginal disc growth factor (IDGF) maintains cuticle s...

2020-09-20 | MTBLS1825 | MetaboLights

Comparing identified and statistically significant lipids and polar metabolites in 15-year old serum and dried blood spot samples for longitudinal studies

Not available

ORGANISM(S): Homo sapiens

ST000608 | MetabolomicsWorkbench

Gene expression data from Guthrie blood-spot cards

Background: Standard Guthrie cards have been widely used to collect blood samples from neonates for newborn screening programs, and to a lesser extent, from normal controls and patients in research studies. Ease of blood collection (small quantity and less pain), transportation, and storage are the...

ORGANISM(S): Homo sapiens

2012-12-07 | E-GEOD-19919 | biostudies-arrayexpress

Shrimp white spot syndrome virus

Shrimp white spot syndrome virus Genome sequencing and assembly

PRJNA413204 | ENA

bean Cercospora leaf spot

PRJEB101894 | ENA

bean Cercospora leaf spot

PRJEB101876 | ENA

DIA proteomics of dried blood spot proteins by sodium carbonate

We developed a simple and sensitive analysis method for dried blood spot (DBS) proteins by sodium carbonate precipitation (SCP). We aimed to removing large amounts of hydrophilic blood proteins such as hemoglobin, albumin, fibrinogen and transferrin in DBS using a simple pretreatment with sodium car...

ORGANISM(S): Homo Sapiens (human)

2020-01-20 | PXD017185 | JPOST Repository

Peanut Leaf Spot Pathogen Genome Sequencing

PRJEB107657 | ENA

Proteomics analysis revealed the activation and suppression of different host defense components challenged with mango leaf spot pathogen Alternaria alternata

In this study, we performed a comprehensive proteomic analysis of mango leaves inoculated with the leaf spot pathogen A. alternata. Down-regulated proteins during pathogen invasion and colonization were primarily associated with photosynthesis, the phenylpropanoid and flavonoid biosynthesis pathways...

ORGANISM(S): Mangifera indica (Mango)

2025-05-07 | PXD060671 | Pride

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