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TranscriptomicsTranscription profiling of Drosophila developmental time series
Michelle N. Arbeitman, Eileen E. M. Furlong, Farhad Imam, Eric Johnson, Brian H. Null, Bruce S. Baker, Mark A. Krasnow, Matthew P. Scott, Ronald W. Davis and Kevin P. White. Gene Expression During the Life Cycle of Drosophila melanogaster, Science, 297: 2270-2275, 2002. This work can be accessed fro...
ORGANISM(S): Drosophila melanogaster 
2004-11-06 | E-FLYC-6 | biostudies-arrayexpress
GenomicSingle-Cell Analysis of Human Pancreatic Ductal Adenocarcinoma

Cancer-associated fibroblasts (CAFs) are major players in the progression and drug resistance of pancreatic ductal adenocarcinoma (PDAC). CAFs constitute a diverse cell population consisting of several recently described subtypes, although the extent of CAF heterogeneity has remained undefined. H...

phs001840 | dbGaP
TranscriptomicsRNA-seq transcriptional profile of Toxoplasma gondii strains RH, PLK, CTG as tachyzoites and bradyzoites
Using high through-put RNA sequencing, we assayed the transcriptomes of three different strains of Toxoplasma gondii representing three common genotypes under both in vitro tachyzoite and in vitro bradyzoite-inducing alkaline stress culture conditions. Strikingly, the differences in transcriptional ...
ORGANISM(S): Toxoplasma gondii 
2014-09-01 | E-GEOD-60305 | biostudies-arrayexpress
TranscriptomicsThe Populus transciptome in elevated CO2 reveals increased anthocyanin biosynthesis during delayed autumnal senescence
Over recent decades the progression of natural autumnal senescence has been increasingly delayed across wide areas of the Northern Hemisphere and is thought to be caused by rising temperature. Recently this delay has been shown to be partly attributable to rising atmospheric carbon dioxide concentr...
ORGANISM(S): Populus x canadensis 
2010-01-31 | E-GEOD-15874 | biostudies-arrayexpress
ProteomicsRelative quantitation of coeliac toxic motifs and IgE epitopes in cereals containing gluten using proteomic profiling
Cereals-based foods cause immune-mediated adverse reactions including coeliac disease and IgE-mediated allergies. Proteomic profiling of proteins carrying coeliac toxic motifs and allergens has been undertaken in wheat, barley, rye and oats in order to understand whether some cereal species, such as...
ORGANISM(S): Triticum aestivum (Wheat) Hordeum vulgare (Barley) Secale cereale Avena sativa 
2026-02-23 | PXD039539 | Pride
Coeliac disease Proteomic profiling Gluten 
TranscriptomicsTranscription profiling of wild type and loss-of-function mutants of Mla1 and Mla6 powdery mildew resistant allele barley plants
A parallel expression profiling of wild-type and loss-of-function mutants of Mla6 and Mla1 powdery mildew resistance alleles was conducted using Barley1 GeneChip. Barley plants were inoculated with powdery mildew isolate 5874 and first leaves were harvested at 6 time points after pathogen inoculat...
ORGANISM(S): Hordeum vulgare 
2008-11-19 | E-TABM-142 | biostudies-arrayexpress
UnknownMultilaboratory Survey To Evaluate Salmonella Prevalence in Diarrheic and Nondiarrheic Dogs and Cats in the United States between 2012 and 2014.
Not available
S-EPMC5405253 | biostudies-literature
TranscriptomicsIntegrative deep sequencing of the mouse lung transcriptome reveals differential expression of diverse classes of small RNAs in response to respiratory virus infection.
We previously reported widespread differential expression of long non-protein-coding RNAs (ncRNAs) in response to virus infection. Here, we expanded the study through small RNA transcriptome sequencing analysis of the host response to both severe acute respiratory syndrome coronavirus (SARS-CoV) and...
ORGANISM(S): Mus musculus 
2012-03-31 | E-GEOD-36971 | biostudies-arrayexpress
TranscriptomicsSmall RNA sequencing in maize hybrids and inbreds
Small RNAs (sRNAs) are hypothesized to contribute to hybrid vigor because they maintain genome integrity, contribute to genetic diversity, and control gene expression. We used Illumina sequencing to assess how sRNA populations vary between two maize inbred lines (B73, Mo17) and their hybrid. We samp...
ORGANISM(S): Zea mays 
2012-05-26 | E-GEOD-37411 | biostudies-arrayexpress
TranscriptomicsRegulatory and evolutionary footprints of messenger RNA secondary structure in primate transcriptomes
Messenger RNA secondary structure is critical to all aspects of post-transcriptional regulation. However, the global regulatory and evolutionary significance of mRNA secondary structure remains largely illusive. Here, we describe a transcriptome-wide analysis of RNA secondary structure in humans and...
ORGANISM(S): Homo sapiens 
2017-05-01 | E-GEOD-57295 | biostudies-arrayexpress
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