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The intestinal microbiota plays a crucial role in protecting the host from pathogenic microbes, in modulating immunity and in regulating metabolic processes. We use the simplified human intestinal microbiota (SIHUMIx) consisting of eight bacterial species to study potential synergistic effects with ...
ORGANISM(S): Blautia producta ATCC 27340 = DSM 2950 Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) Clostridium butyricum DSM 10702 Anaerostipes caccae DSM 14662 Bifidobacterium longum NCC2705 Erysipelatoclostridium ramosum DSM 1402 Escherichia coli Lactobacillus plantarum subsp. plantarum 
2021-09-09 | PXD020005 | Pride
This proof-of-principle experiment was designed to demonstrate the feasibility of proximity labeling for RNAM-bM-^@M-^Sprotein interactions IPL-seq on 293T-Rex expressing MSA-SNRPN70 (sample) or NFH-SNRPN70 (control)
ORGANISM(S): Homo sapiens 
Data files associated with sprotein detection in M. tuberculosis
ORGANISM(S): Mycobacterium Tuberculosis (ncbitaxon:1773) 
2021-05-28 | MSV000087541 | MassIVE
Small proteins (sProteins) with a size of 100 amino acids and less are involved in major biological processes and play an important role in different bacteria. Despite the increasing interest in them, the data on sProteins in bacterial communities, like the human gut microbiome is sparse. A reason f...
ORGANISM(S): Blautia producta ATCC 27340 = DSM 2950 Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) Anaerostipes caccae DSM 14662 Clostridium butyricum DSM 10702 Escherichia coli str. K-12 substr. MG1655 Bifidobacterium longum NCC2705 Erysipelatoclostridium ramosum DSM 1402 Lactobacillus plantarum subsp. plantarum 
2020-01-07 | PXD016298 | Pride
The sprotein PhrS-P, encoded by the dual-function small RNA PhrS, augments aminoglycoside resistance in Pseudomonas aeruginosa
The interaction between neurogenesis and angiogenesis after traumatic brain injury is a complex and dynamic process. To resolve this, we chose the zebrafish model organism for studying brain wound healing via systems biology approach. Transcriptome microarray data and histological analysis of injure...
ORGANISM(S): Danio rerio 
The interaction between fungal pathogen and host innnate and adaptive immunity during infection is a complex and dynamic process. To resolve this, we chose the zebrafish model organism as the host to study C. albicans infection via systems biology approach. Transcriptome microarray data and histolog...
ORGANISM(S): Danio rerio 
The approach suggested here can be used more widely to determine the suitability of proteins or sets of proteins as loading and normalization controls for any biological system. As we have shown here, historically selected ‘household proteins’ may not be the most suitable for this task for technical...
ORGANISM(S): Mus musculus (Mouse) Homo sapiens (Human) 
2016-06-20 | PXD003422 | Pride
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