Spurious - OmicsDI

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Genomics (253)
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Organisms

Homo sapiens (84)
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Organisms

Homo sapiens (45)
Mus musculus (43)
Saccharomyces cerevisiae (11)
Arabidopsis thaliana (8)
Drosophila melanogaster (7)
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Schizosaccharomyces pombe (3)
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hypersaline lake metagenome (2)
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uncultured fungus (1)
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Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 (1)
Saccharomyces cerevisiae BY4741 (1)
Bacillus subtilis (1)
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metagenome (1)
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Repository

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Disease

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Technology Type

Mass Spectrometry (29)
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Instrument Platform

Illumina HiSeq 4000 (7)
NextSeq 500 (5)
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6550 iFunnel Q-TOF LC/MS (Agilent) (2)
Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - positive - hilic (2)
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Bruker (1)
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Liquid Chromatography MS - negative - hilic (1)

Publication Date

2017 (27)
2022 (27)
2023 (26)
2025 (24)
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2021 (15)
2015 (15)
2010 (15)
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2019 (8)
2016 (6)
2009 (6)
2008 (3)
2006 (3)
2005 (2)
2007 (2)
2001 (1)

UNIPROT ID/AC

3MG2_ECOLI (2)
3PASE_ECOLI (2)
511145.b2088 (2)
511145.b2394 (2)
511145.b3505 (2)
5DNU_ECOLI (2)
5FCL_ECOLI (2)
6PGL_ECOLI (2)
A2MG_ECOLI (2)
AAAT_ECOLI (2)
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ACFD_ECOLI (2)
ACKA_ECOLI (2)
ACNA_ECOLI (2)
ACNB_ECOLI (2)
ACPH_ECOLI (2)
P32485 (1)
P08018 (1)
P23561 (1)
P06784 (1)
P16892 (1)

CHEBI ID

CHEBI:16919 (6)
CHEBI:27570 (4)
CHEBI:24898 (4)
CHEBI:28044 (4)
CHEBI:27266 (4)
CHEBI:15891 (4)
CHEBI:17368 (4)
CHEBI:45441 (3)
CHEBI:17822 (3)
CHEBI:26271 (3)
CHEBI:17126 (3)
CHEBI:16811 (3)
CHEBI:25017 (3)
CHEBI:18237 (3)
CHEBI:17509 (3)
CHEBI:73024 (3)
CHEBI:57593 (3)
CHEBI:17154 (3)
CHEBI:16335 (3)
CHEBI:16737 (3)
CHEBI:35280 (3)
CHEBI:30769 (3)
CHEBI:136124 (2)
CHEBI:91054 (2)
CHEBI:132692 (2)
CHEBI:134291 (2)
CHEBI:132556 (2)
CHEBI:132674 (2)
CHEBI:136210 (2)
CHEBI:132673 (2)

Metabolite Name

Creatine (3)
LysoPE(20:0) (2)
PI(40:3) (2)
PE(P-38:3) (2)
Histidine (2)
N-Acetylserine (2)
Leucine (2)
2-Aminoadipic acid (2)
AMP (2)
Valine (2)
2-Hydroxyethanesulfonate (2)
Neuraminic acid (2)
Methionine (2)
Taurine (2)
Serine (2)
Phenylalanine (2)
Isoleucine (2)
Xanthine (2)
Creatinine (2)
Hypoxanthine (2)
PE(40:9) (1)
6,7-Epoxyoctadecanoic acid (1)
DiHETrE (1)
DHET (1)
HxB3 (1)
HxA3 (1)
DiHETE (1)
HpETE (1)
PGF2 lactone (1)
HpODE (1)

First Public Date

2023 (34)
2025 (22)
2022 (18)
2020 (16)
2026 (15)
2014 (15)
2017 (14)
2018 (11)
2013 (11)
2019 (10)
2021 (9)
2024 (6)
2016 (6)
2015 (5)

Modelling Approach

Ordinary differential equation model (6)

Lab affiliation

Biochemistry and Molecular Biology Department, Eberly College of Science, Pennsylvania State University, University Park, PA, USA. (2)
VIB Midical Biotechnology Center, University of Gent, Belgium (2)
Bioinformatics, TruDiagnostic, USA (1)
Caprion Biosciences, 201 President-Kennedy Ave., Montreal, H2X 3Y7, Quebec, Canada (1)
Center for Malaria Research, Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, Pennsylvania 16802 (1)
Centre for Genomic Regulation, CRG (1)
Core Facility Proteomics, Institute of Clinical Chemistry, University Medical Center Goettingen, Germany (1)
Department of Biochemistry and Molecular Genetics, School of Medicine, University of Colorado, Aurora, CO, USA (1)
Department of Biomedical Sciences College of Medicine Florida State University (1)
Department of Chemistry & Chemical Biology, Northeastern University (1)
Department of Genome Sciences, University of Washington, Seattle, WA, USA (1)
Department of Molecular Biophysics & Biochemistry, Yale School of Medicine, PO Box 208114, New Haven, CT, 06520 (1)
Institut de biologie moléculaire des plantes, CNRS, Université de Strasbourg, Strasbourg, France (1)
Institute for Research in Immunology and Cancer (IRIC), University of Montreal (1)
Institute of Biochemistry II, Faculty of Medicine, Goethe University Frankfurt; Frankfurt, Germany. (1)
Institute of Biochemistry II, Faculty of Medicine, Goethe University, Frankfurt am Main, Germany Frankfurt Cancer Institute, Frankfurt am Main, Germany Cardio-Pulmonary Institute, Frankfurt am Main, Germany (1)
Laboratory of Genome Biology, Institute of Molecular Biology and Biotechnology, Adam 8 Mickiewicz University, 61-614 Poznan, Poland (1)
MSAP UAR 3290 CNRS (1)
Personalis Inc., Menlo Park, USA. (1)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (1)
Rudolf Virchow Center University of Wuerzburg (1)
School of Life Sciences, Technical University of Munich, Freising, Germany (1)
Senior Scientist Protein Expression and Modification Division New England Biolabs (1)
Stephen Fried Johns Hopkins University Fried Lab Chemistry Department (1)
UCLA (1)
[1]University of Iowa, Carver College of Medicine, Iowa City, Iowa, 52242, USA [2]University of Rochester, Rochester, NY, 14642 (1)

IsPrivate

False (6)

Model Flag

Sbml Extended (1)
Non Kinetic (1)

Classification

bacteria (3)
protozoa (2)

Study type

RNA-seq of coding RNA (29)
Transcription profiling by array (25)
ChIP-seq (15)
Transcription profiling by tiling array (7)
ChIP-chip by tiling array (4)
Methylation profiling by array (3)
Comparative genomic hybridization by array (2)
RNA-seq of total RNA (2)
RNA-seq of non coding RNA (2)
Unknown experiment type (1)
Cell line - High-throughput sequencing (1)
ChIP-chip by array (1)
Ribo-seq (1)
Other (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2025 (155)
2022 (150)
2020 (126)
2021 (124)
2023 (110)
2024 (109)
2018 (101)
2019 (96)
2016 (90)
2015 (77)
2017 (71)
2014 (67)
2012 (65)
2013 (49)
2010 (44)
2011 (40)
2009 (31)
2008 (27)
2026 (25)
2007 (20)
2006 (13)
2005 (8)
2004 (5)
2003 (4)
1999 (2)
2001 (1)

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Spontaneous hydrolysis and spurious metabolic properties of α-ketoglutarate esters

Not available

ORGANISM(S): Homo sapiens

ST001860 | MetabolomicsWorkbench

The fitness cost of spurious phosphorylation

The fidelity of signal transmission requires the binding of regulatory molecules to their cognate targets. However, the crowded cell interior risks off-target interactions between proteins that are functionally unrelated. Understanding the constraints this imposes on cell systems evolution requires ...

ORGANISM(S): Homo sapiens (Human) Saccharomyces cerevisiae (Baker's yeast)

2024-09-12 | PXD045466 | Pride

PWWP2A variant NuRD complex represses intragenic spurious transcription initiation

PRJNA624108 | ENA

metagenome

Spurious ASVs

PRJNA595174 | ENA

ARE DISCOVERIES SPURIOUS? DISTRIBUTIONS OF MAXIMUM SPURIOUS CORRELATIONS AND THEIR APPLICATIONS.

Not available

S-EPMC6014708 | biostudies-literature

5-hydroxymethylcytosine Promotes Productive Transcription and Inhibits Spurious Promoters

PRJNA529472 | ENA

Complexity of expression from transiently transfected plasmids

Transient plasmid transfection is common approach for studies in cultured mammalian cells. To examine behavior of transfected plasmids, we analyzed their transcriptional landscape by deep sequencing. We found that plasmids generate different levels of transcripts virtually everywhere. Spurious trans...

ORGANISM(S): Homo sapiens

2012-08-17 | E-GEOD-36062 | biostudies-arrayexpress

The fitness cost of spurious phosphorylation.

Not available

S-EPMC11480408 | biostudies-literature

PWWP2A variant NuRD complex represses intragenic spurious transcription initiation

H3 trimethylation at K36 deposited over the body of actively transcribed gene, is recognized by readers to modulate the epigenetic states, such as DNA methylation and histone deacetylation, to ensure the proper gene transcription. PWWP2A was identified as the reading component of variant NuRD comple...

ORGANISM(S): Mus musculus

2020-09-15 | GSE148382 | GEO

Spurious capillary zone electrophoresis pattern in hypercholesterolemic dogs.

Not available

S-EPMC9999394 | biostudies-literature

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