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ProteomicsControl of carbon assimilation by Candida albicans
Not available
ORGANISM(S): Candida albicans (Yeast) 
2013-07-08 | PRD000035 | Pride
TranscriptomicsIdentification of RNAs associated with the Caenorhabditis elegans spliced-leader trans-splicing proteins SNA-2, SNA-3, SNR-2 and SUT-1 proteins by RIP-Seq.
This study aimed to identify RNAs bound to the C. elegans SNA-2, SNA-3, SUT-1 and SNR-2 proteins involved in spliced leader 1 trans-splicing through use of RNA immunoprecipitation sequencing (RIP-Seq). Four IP sample replicates and four control sample replicates were sequenced for each protein.
ORGANISM(S): Caenorhabditis elegans 
2024-04-24 | E-MTAB-13193 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of nodose or dorsal root ganglion visceral sensory neurons from mice infected with N. brasiliensis and/or subjected to environmental stress to determine molecular signatures for post-infective visceral chemosensitivity associated with irritable bowel syndrome
Background & Aims: Visceral hypersensitivity, a hallmark of irritable bowel syndrome, is generally considered to be mechanosensitive in nature and mediated via spinal afferents. Both stress and inflammation are implicated in visceral hypersensitivity, but the underlying molecular mechanisms of visce...
ORGANISM(S): Mus musculus 
2008-01-31 | E-JJRD-1 | biostudies-arrayexpress
ProteomicsAnalysis of proteins that bind promoter of the PDR5 multidrug transporter gene in Saccharomyces cerevisiae using minichromosome isolation and LC-MS/MS
The Pleiotropic Drug Resistance (PDR) network is central to the drug response in fungi, and its overactivation is associated with drug resistance. However, gene regulation of the PDR network is not well understood. Here, we established a method to identify proteins that bind promoter of the PDR5 mul...
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2022-02-22 | PXD028798 | Pride
Lc-msms Minichromosome Promoter-binding proteins Immunoprecipitation Saccharomyces cerevisiae 
ProteomicsMass spectrometry analysis of the impact of replication stress upon phosphorylation and protein interaction of human RIF1 protein
Wild-type or S2265A version of GFP-RIF1 protein (isoform 1) was over-expressed in Flp-In-T-REx cells (Watts et al. 2020. eLife 9:e58020) and immunopurified using GFP-Trap magnetic agarose beads. Proteins were subjected to on-beads trypsin digestion and resulting peptides were analysed by mass spect...
ORGANISM(S): Homo sapiens (Human) 
2022-04-14 | PXD032015 | Pride
Rif1 Protein phosphorylation Replication stress 
TranscriptomicsTranscription profiling wild type C. albicans after treatment with stress-inducing doses of acetic acid
Transcript profiling was performed using a wild-type C. albicans strain (CaI8+CIp10). Cells were cultured in 50 ml SC-pH3.0 to a cell density of 1x10^7 cells per ml and then either treated with control (0 mM acetic acid) or stress inducing (20 mM acetic acid) doses. Cells from the same culture were ...
ORGANISM(S): Candida albicans 
2008-07-31 | E-MEXP-1633 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Candida albicans wild type and mnl1 cells after treatment with acetic acid
Wt vs mnl1 cells after 300 min treatment with 20 mM acetic acid in SC-pH3.0
ORGANISM(S): Candida albicans 
2008-07-31 | E-MEXP-1641 | biostudies-arrayexpress
TranscriptomicsTranscription profiling time series of Candida albicans treated with different doses of acetic acid
Wild type Candida albicans (CAI8 containing CIp10) cultures were grown in triplicate at 1 x 107 cells ml-1 in 50 ml SC-pH3.0 broth. Cultures were then treated with 0, 20, 120 or 300
mM acetic acid. Cells were harvested after zero, 10, 30, 60, 120, 210 and 300 min treatment. RNA isolated from tri...
ORGANISM(S): Candida albicans 
2008-07-31 | E-MEXP-1645 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of murine neurons in the nodose and dorsal root ganglia to elucidate molecular characteristics of different sensory neorons.
Vagal afferent neurons are thought to convey primarily physiological information, whereas spinal afferents transmit noxious signals from the viscera to the central nervous system. In order to elucidate molecular identities for these different properties, we compared gene expression profiles of neu...
ORGANISM(S): Mus musculus 
2007-08-31 | E-GEOD-2917 | biostudies-arrayexpress
ProteomicsOmykiss - Liver, iBAQ (Causeyetal,bmcgenomics2018)
abundance based on iBAQ, Interaction consistency score: 5.5, Coverage: 13
ORGANISM(S): 8022 
2018-00-00 | 4265139541 | PAXDB
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