Stroma immune - OmicsDI

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Organisms

Mus musculus (134)
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unidentified (2)
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pride (27)
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Disease

Breast cancer (3)
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Technology Type

Mass Spectrometry (27)
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SWATH MS (2)
NextSeq 500, ILLUMINA (1)
Nanostring cancer pathway, Nanostring Cancer Immune, ILLUMINA, Affymetrix GeneChipÂ® Human Transcriptome Array 2.0, Illumina HiSeq 4000 (1)
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454 GS FLX Titanium, Illumina HiSeq 2000 (1)
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Instrument Platform

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Scanning of was performed on an Axon 4000B scanner (2)
Illumina HiSeq 4000 (2)
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- (1)
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CHEBI ID

CHEBI:195231 (1)
CHEBI:173769 (1)
CHEBI:71572 (1)
CHEBI:19891 (1)
CHEBI:27932 (1)
CHEBI:27978 (1)
CHEBI:35807 (1)
CHEBI:68889 (1)
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CHEBI:33568 (1)
CHEBI:68566 (1)
CHEBI:27856 (1)
CHEBI:60647 (1)
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CHEBI:24149 (1)
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CHEBI:17482 (1)
CHEBI:15688 (1)
CHEBI:6359 (1)
CHEBI:16024 (1)

Metabolite Name

L-Cysteine (2)
Uracil (2)
S-Adenosylhomocysteine (2)
L-Threonine (2)
Taurine (2)
Glycylproline (2)
L-Tryptophan (2)
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Hydantoin-5-Propionic Acid (1)
Tricin 7-Neohesperidoside (1)
Delta Sleep-Inducing Peptide Phosphate (1)
1,4,10,13-Tetraoxa-7,16-Diazacyclooctadecane (1)
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Ethylenedicysteine (1)
Bis(Diaminomethylideneamino) Butanedioate (1)
7,8-Dihydroneopterin 3'-Phosphate (1)
1-[3,4-Dihydroxy-5-(Hydroxymethyl)Oxolan-2-Yl]-5-Hydroxyimidazole-4-Carboxamide (1)
Methyl-4-Hydroxybenzoate (1)
N-Formyl-Dl-Methionine (1)
4-Amino-5-Hydroxy-2,7-Naphthalenedisulfonic Acid (1)
Tricin 7-[Feruloyl-(->2)-Glucuronyl-(1->2)-Glucuronide] (1)
(3Beta,6Beta)-Furanoeremophilane-3,6-Diol 6-Acetate (1)

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Study type

Transcription profiling by array (129)
ChIP-chip by array (6)
RNA-seq of coding RNA (5)
ChIP-chip by tiling array (4)
RNA-seq of coding RNA from single cells (4)
Spatial transcriptomics by high-throughput sequencing (3)
Methylation profiling by high throughput sequencing (3)
Unknown experiment type (2)
Animal - One-color microarray (2)
Genotyping by array (2)
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ChIP-seq (2)
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Baseline (1)
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Release Date

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2025 (156)
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2011 (27)
2010 (26)
2008 (13)
2006 (6)
2007 (5)
2005 (2)
2003 (2)
2004 (1)
1998 (1)

Lab affiliation

Director of Women’s Health Research Women’s Service Line Inova Health System (2)
Merck & Co., Inc. (2)
Barnett Institute of Chemical and Biological Analysis, Department of Chemistry and Chemical Biology, Northeastern University, 360 Huntington Ave., Boston, Massachusetts 02115, United States (1)
Biozentrum der LMU München Pflanzenwissenschaften Großhaderner Str. 2-4 82152 Planegg-Martinsried phone +49 +89 2180 74760 (1)
Cell and Chemical Biology Leiden University Medical Center (LUMC) The Netherlands (1)
Centre for Cancer Biomarkers (CCBIO), Department of Clinical Medicine, Faculty of Medicine, University of Bergen, Norway (1)
Daglig leder, PROMEC Institutt for klinisk og molekylær medisin lars.hagen@ntnu.no 73598508 72573342 Laboratoriesenteret, 231.04.008, Øya, Erling Skjalgssons gate 1 PROMEC, Norway (1)
Department of Developmental Biology and Cancer Research, Institute for Medical Research Israel-Canada, Faculty of Medicine, The Hebrew University of Jerusalem, Jerusalem, Israel. (1)
Department of Innovative Technologies in Medicine and Dentistry,University “G. d’Annunzio” of Chieti-Pescara, Italy (1)
Department of Medical Oncology, Erasmus MC Cancer Institute, Erasmus University Medical Center, Rotterdam, The Netherlands (1)
Department of Microbiology and Immunology, Institute of Biomedicine, University of Gothenburg, Sweden (1)
Department of Pathology, University of Arkansas for Medical Sciences, Little Rock, AR, USA (1)
Dept. of Immunobiology, University of Lausanne, Switzerland (1)
Faculty of Medecine, University Paris Cité SFR Necker INSERM US24 160 rue de Vaugirard | 75015 Paris (1)
Institut de Pharmacologie et de Biologie Structurale (IPBS), Université de Toulouse, CNRS, Université Toulouse III - Paul Sabatier (UT3), Toulouse, France Infrastructure Nationale de Protéomique, ProFI, FR 2048, Toulouse, France (1)
Institute for Research in Biomedicine (IRB), Università della Svizzera italiana, Bellinzona, Switzerland (1)
Laboratory of Toxinology, Oswaldo Cruz Institute, Fiocruz, Av. Brasil 4365, Manguinhos 21040-360, Rio de Janeiro, Brazil (1)
Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Denmark (1)
Research Laboratory in Human Reproduction, Université Libre de Bruxelles (ULB), 1070 Brussels, Belgium (1)
Sanford Burnham Prebys (1)
Sir Peter MacCallum Department of Oncology, Peter MacCallum Cancer Centre, The University of Melbourne, Victoria 3000, Australia (1)
Tranlational Oncology Group, Center for Tumor Biology and Immunology, Philipps University, Marburg, Germany (1)
Wallace H. Coulter Department of Biomedical Engineering, Georgia Institute of 6 Technology and Emory University, Atlanta, GA, USA (1)
Women's Health Integrated Research Center, Gynecologic Cancer Center of Excellence, Gynecologic Surgery and Obstetrics, Uniformed Services University of the Health Sciences, Bethesda, MD, USA (1)
Women’s Service Line Ionva Health System (1)

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Comparative Proteomics Reveals Prolonged Corneal Preservation Impaired Ocular Surface Immunity Accompanied with Fibrosis in Human Stroma

Cornea transplantation is a widely performed procedure globally. However, storing donor corneas for extended periods in Optisol-GS storage medium at 4 ℃ can lead to reduced endothelial cell viability, causing severe stromal edema and opacification. This negatively impacts transplantation success. Th...

ORGANISM(S): Homo Sapiens (human)

2024-09-29 | PXD045907 | JPOST Repository

Gene expression profiling of tumor stroma in human intrahepatic cholangiocarcinoma

Intrahepatic cholangiocarcinoma (ICC) is the second most common type of primary cancer in the liver. ICC is an aggressive cancer with poor prognosis and limited therapeutic strategies. The identification of new drug targets and prognostic biomarkers is an important clinical challenge for ICC. The pr...

ORGANISM(S): Homo sapiens

2013-06-21 | E-GEOD-45001 | biostudies-arrayexpress

ProteoMixture: A Cell Deconvolution Tool for Bulk Tissue Proteomics Data

Numerous multi-omic investigations of cancer tissue have documented varying and poor pairwise transcript:protein quantitative correlations and most deconvolution tools aiming to predict cell type proportions (cell admixture) have been developed and credentialed using transcript-level data alone. To ...

ORGANISM(S): Homo sapiens (Human)

2024-01-12 | PXD044157 | Pride

A Novel Humanized Immune Stroma PDX Model for Therapeutic Studies

PRJNA923347 | ENA

Identification of distinct immune subtypes in colorectal cancer based on stroma compartment

PRJNA563363 | ENA

Transcriptome of the bone metastasis associated stroma

The reciprocal interaction between cancer cells and the tissue-specific stroma is critical for primary and metastatic tumor growth progression. Prostate cancer cells colonize preferentially bone (osteotropism), where they alter the physiological balance between osteoblast-mediated bone formation and...

ORGANISM(S): Mus musculus

2014-12-09 | E-GEOD-22813 | biostudies-arrayexpress

Loss of Lkb1 and Pten Leads to Lung Squamous Cell Carcinoma with Elevated Pdl1 Expression: Stroma Cells

Lung squamous cell carcinoma (SCC) is a deadly disease for which current treatments are inadequate. We demonstrate that bi-allelic inactivation of Lkb1 and Pten in the mouse lung led to SCC that recapitulated the histology, gene expression and microenvironment found in human disease. Lkb1/Pten-null ...

ORGANISM(S): Mus musculus

2014-01-24 | E-GEOD-54352 | biostudies-arrayexpress

Immune cell distribution and DNA methylation signatures differ between tumor and stroma enriched compartment in pancreatic ductal adenocarcinoma

PRJNA1024398 | ENA

Deconstruction of the immune microenvironment identifies tumor-, immune- and stroma-specific subtypes of intrahepatic cholangiocarcinoma

PRJNA719651 | ENA

Enhanced immune responses to vaccine antigens in the corneal stroma.

Not available

S-EPMC9892265 | biostudies-literature

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