Subcellular localisation

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Unknown (290)
Transcriptomics (144)
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Models (2)

Organisms

Homo sapiens (73)
Allexis (51)
Arabidopsis thaliana (51)
Bos taurus (51)
Callinectes sapidus (51)
Drosophila melanogaster (51)
Mus musculus (38)
Arabidopsis thaliana (14)
Saccharomyces cerevisiae (13)
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Allochromatium vinosum DSM 180 (3)
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cellular organisms (1)
Halobacterium salinarum NRC-1 (1)

Organisms

Homo sapiens (11)
Toxoplasma gondii RH (1)
Apopellia endiviifolia (1)
Drosophila melanogaster (1)
Arabidopsis thaliana (1)
Mus musculus (1)

Repository

biostudies-arrayexpress (140)
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Tissue

Cell culture (20)
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Disease

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Disease free (4)
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Acute leukemia (1)
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Haemonchiasis (1)
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Legionnaires' disease (1)
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Neuroblastoma (1)
Pancreatitis (1)
Parkinson's disease (1)
Plasmodium malariae malaria (1)
Pontiac fever (1)
Prostate adenocarcinoma (1)
Septicemia (1)
Temporal lobe epilepsy (1)

Technology Type

Mass Spectrometry (51)
Shotgun proteomics (31)
Affinity purification coupled with mass spectrometry proteomics (11)
Bottom-up proteomics (8)
Data-dependent acquisition (6)
Data-independent acquisition (3)
Mass spectrometry (2)
Mass spectrometry assay (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
DiaPASEF (1)
Gel-based experiment (1)
SRM/MRM (1)
Top-down proteomics (1)

Instrument Platform

NextSeq 500 (11)
LTQ Orbitrap (10)
Instrument (6)
LTQ Orbitrap Elite (4)
LTQ Orbitrap Velos (3)
Orbitrap Fusion Lumos (3)
Q Exactive (3)
NextSeq 2000 (2)
Illumina NovaSeq 6000 (2)
LTQ (2)
Q Exactive HF (2)
Q Exactive HF-X (2)
Q Exactive Plus (2)
Coulter Automated Workstation Biomek i7 Hybrid (1)
RNeasy 96-well plate kit (1)
GeneChip Scanner 3000 [Affymetrix] (1)
Illumina Genome Analyzer IIx (1)
None (1)
Agilent 1260, Velos Plus (1)
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LTQ Velos (1)
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MaXis II (1)
MicrOTOF-Q II (1)
Orbitrap Exploris 480 (1)
Orbitrap Fusion (1)
Orbitrap Fusion ETD (1)
Q Exactive Orbitrap HF (1)
TimsTOF Pro (1)
TimsTOF Ultra (1)

Publication Date

2023 (23)
2019 (20)
2012 (20)
2013 (19)
2014 (18)
2016 (16)
2010 (16)
2022 (15)
2006 (13)
2015 (12)
2021 (12)
2026 (11)
2025 (11)
2011 (11)
2024 (11)
2020 (10)
2009 (10)
2018 (7)
2007 (5)
2005 (4)
2008 (4)
2017 (1)

UNIPROT ID/AC

10090.ENSMUSP00000048857 (6)
10090.ENSMUSP00000079727 (6)
10090.ENSMUSP00000080088 (6)
10090.ENSMUSP00000083973 (6)
10090.ENSMUSP00000088281 (6)
10090.ENSMUSP00000088285 (6)
10090.ENSMUSP00000089293 (6)
10090.ENSMUSP00000089300 (6)
10090.ENSMUSP00000089335 (6)
10090.ENSMUSP00000089339 (6)
10090.ENSMUSP00000089345 (6)
10090.ENSMUSP00000089346 (6)
10090.ENSMUSP00000090897 (6)
10090.ENSMUSP00000095287 (6)
10090.ENSMUSP00000095794 (6)
10090.ENSMUSP00000100034 (6)
10090.ENSMUSP00000100581 (6)
10090.ENSMUSP00000100738 (6)
10090.ENSMUSP00000105709 (6)
10090.ENSMUSP00000113068 (6)
10090.ENSMUSP00000123410 (6)
10090.ENSMUSP00000124509 (6)
10090.ENSMUSP00000136358 (6)
1433E_MOUSE (6)
2AAA_MOUSE (6)
3HIDH_MOUSE (6)
6PGL_MOUSE (6)
A1AT1_MOUSE (6)
AATC_MOUSE (6)
AATM_MOUSE (6)

ENSEMBL ID

ENSDARG00000063559 (1)
ENSDARG00000090714 (1)
ENSDARG00000051873 (1)
ENSDARG00000061100 (1)
ENSDARG00000035506 (1)
ENSDARG00000024112 (1)
ENSDARG00000057714 (1)
ENSDARG00000010347 (1)
ENSDARG00000059411 (1)
ENSDARG00000036809 (1)
ENSDARG00000035565 (1)
ENSDARG00000029952 (1)
ENSDARG00000045414 (1)
ENSDARG00000020270 (1)
ENSDARG00000070844 (1)
ENSDARG00000077782 (1)
ENSDARG00000052942 (1)
ENSDARG00000075754 (1)
ENSDARG00000051853 (1)
ENSDARG00000077244 (1)
ENSDARG00000032218 (1)
ENSDARG00000063167 (1)
ENSDARG00000069937 (1)
ENSDARG00000063433 (1)
ENSDARG00000044642 (1)
ENSDARG00000016048 (1)
ENSDARG00000004115 (1)
ENSDARG00000006577 (1)
ENSDARG00000019236 (1)
ENSDARG00000059123 (1)

CHEBI ID

CHEBI:194455 (1)
CHEBI:194482 (1)
CHEBI:30512 (1)
CHEBI:29287 (1)
CHEBI:167042 (1)
CHEBI:166963 (1)
CHEBI:167039 (1)
CHEBI:134486 (1)
CHEBI:167038 (1)
CHEBI:167037 (1)
CHEBI:167036 (1)
CHEBI:167032 (1)
CHEBI:167030 (1)
CHEBI:167028 (1)
CHEBI:167025 (1)
CHEBI:167024 (1)
CHEBI:167023 (1)
CHEBI:167022 (1)
CHEBI:167021 (1)
CHEBI:167020 (1)
CHEBI:167019 (1)
CHEBI:167018 (1)
CHEBI:166987 (1)
CHEBI:167035 (1)
CHEBI:155817 (1)
CHEBI:167041 (1)
CHEBI:72532 (1)
CHEBI:7613 (1)
CHEBI:167027 (1)
CHEBI:167026 (1)

Metabolite Name

So(d18:1) (1)
SM(d44:2) (1)
SM(d42:1) (1)
SM(42:0) (1)
PS(P-38:5) (1)
PMeOH(34:1) (1)
DMPE(32:0) (1)
CL(36:3)_(36:3) (1)
CL(34:2)_(34:2) (1)
CL(32:2)_(34:2) (1)
HexCer(d42:1) (1)
HexCer(d34:1) (1)
PC(P-42:2) (1)
PC(P-32:2) (1)
PC(P-30:0) (1)
PC(O-40:2) (1)
PC(O-40:1) (1)
PC(O-38:2) (1)
TG(O-56:3) (1)
TG(O-56:1) (1)
TG(O-54:3) (1)
TG(O-54:2) (1)
TG(O-50:2) (1)
TG(O-50:0) (1)
TG(O-48:1) (1)
TG(64:13) (1)
TG(64:10) (1)
TG(64:9) (1)
TG(64:7) (1)
TG(64:6) (1)

First Public Date

2026 (4)
2023 (4)
2025 (3)
2020 (3)
2024 (2)
2022 (2)
2021 (2)
2019 (2)
2014 (1)

Lab affiliation

Cancer Research UK Cambridge Institute University of Cambridge Li Ka Shing Centre Cambridge CB2 0RE United Kingdom (2)
Lanzhou Veterinary Research Institute (2)
Bernhard Nocht Institute for Tropical Medicine, Hamburg, Germany. (1)
CRUK Cambridge Institute University of Cambridge Li Ka Shing Centre Robinson Way CB2 0RE Cambridge United Kingdom (1)
Cambridge Centre for Proteomics, Department of Biochemistry, University of Cambridge, Tennis Court Road, Cambridge, CB2 1GA, UK (1)
Cambridge Centre for Proteomics, Department of Biochemistry, University of Cambridge, UK. (1)
Cambridge Institute for Medical Research, University of Cambridge, Hills Road, Cambridge, CB2 0XY, UK (1)
Cancer Research UK Cambridge Institute University of Cambridge Li Ka Shing Centre Cambridge CB2 0RE United Kingdom (1)
Cell Biology, Harvard Medical School (1)
Centre for Cancer Cell and Molecular Biology, Barts Cancer Institute, Queen Mary University of London, Charterhouse square, London EC1M 6BQ, The United Kingdom. (1)
Centre for Cancer Cell and Molecular Biology, Barts Cancer Institute, Queen Mary University of London, Charterhouse square, London EC1M 6BQ, United Kingdom. (1)
Centre for Proteome Research, Biochemistry and Systems Biology Department, University of Liverpool (1)
Charles University, Faculty of Science, Department of Parasitology, BIOCEV, Vestec 252 50, Czech Republic. (1)
China-UK-NYNU-RRES Joint Laboratory of Insect Biology, Nanyang Normal University (NYNU), Nanyang 473061, Henan, People’s Republic of China (1)
College of Animal Science and Technology, Northwest A&F University, Yangling (1)
Department of Biochemistry University of Cambridge Cambridge UK CB2 1GA (1)
Department of Biochemistry and Pharmacology, The University of Melbourne, Parkville, 3052, Victoria, Australia (1)
Department of Biochemistry, University of Cambridge (1)
Department of Biochemistry, University of Cambridge, UK (1)
Department of Laboratory Medicine, General Hospital of the Xinjiang Military Command, Urumqi, Xinjiang Uygur Autonomous Region, China (1)
Department of Molecular and Applied Microbiology, Leibniz Institute for Natural Product Research and Infection Biology - Hans Knöll Institute (1)
Department of Molecular and Integrative Biosciences University of Helsinki (1)
Department of Pathogenic Biology, West China School of Basic Medical Sciences and Forensic Medicine, Sichuan University, Chengdu, China (1)
Department of Veterinary Biosciences, Melbourne Veterinary School, The University of Melbourne, Parkville, Victoria 3010, Australia (1)
Division of Cancer Biology, Institute of Cancer Research, 237 Fulham Road, London SW3 6JB, UK. (1)
Division of Cancer Biology, Institute of Cancer Research, 237 Fulham road, London SW3 6JB, UK. (1)
Inserm UNIS UMR_S 1072 51 Boulevard Pierre Dramard 13015 Marseille FRANCE (1)
Institute of Integrative Biology Biosciences Building Crown Street University of Liverpool Liverpool L69 7ZB UK (1)
Institute of Metabolic Science, University of Cambridge, UK (1)
Institute of Systems, MOlecular & Intergative Biology, Faculty of Health & Life Sciences, University of Liverpool (1)

IsPrivate

False (2)

Model Flag

Non Kinetic (2)

Classification

protozoa (1)

Study type

Transcription profiling by array (71)
RNA-seq of coding RNA (35)
ChIP-seq (7)
RNA-seq of non coding RNA (6)
Unknown experiment type (5)
RIP-chip by array (3)
Other (3)
Transcription profiling by SAGE (2)
Cell line - High-throughput sequencing (2)
ChIP-chip by array (2)
RNAi profiling by array (1)
Transcription profiling by RT-PCR (1)
MicroRNA profiling by array (1)
Methylation profiling by array (1)

Release Date

2023 (39)
2022 (38)
2025 (34)
2013 (27)
2015 (25)
2012 (25)
2021 (25)
2016 (23)
2014 (23)
2020 (20)
2019 (20)
2018 (19)
2010 (18)
2024 (17)
2011 (16)
2017 (13)
2009 (12)
2026 (10)
2008 (8)
2007 (7)
2006 (7)
2005 (3)
2000 (1)

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Subcellular antibiotic visualization reveals a dynamic drug reservoir in infected macrophages

Tuberculosis, caused by the intracellular pathogen Mycobacterium tuberculosis, remains the world's deadliest infectious disease. Sterilizing chemotherapy requires at least 6 months of multidrug therapy. Difficulty visualizing the subcellular localization of antibiotics in infected host cells means t...

2020-12-07 | MTBLS959 | MetaboLights

Simultaneous characterisation of RNA and protein subcellular dynamics

Existing methods to analyse RNA localisation are constrained to specific RNAs or subcellular niches, precluding the cell-wide mapping of RNA. We present Localisation of RNA (LoRNA), which maps, at once, RNAs to membranous (nucleus, ER and mitochondria) and membraneless compartments (cytosol, nucleol...

ORGANISM(S): Homo sapiens (Human)

2022-01-25 | PXD030456 | Pride

Inferring differential subcellular localisation in comparative spatial proteomics using BANDLE.

Not available

S-EPMC9550814 | biostudies-literature

LOPIT-DC subcellular map of U-2 OS cells

Generation of a high-resolution subcellular localisation map for the proteome of the human cancer cell line U-2 OS, using the newly developed LOPIT-DC method. Comparison of the results generated using LOPIT-DC with data generated using the well-established hyperLOPIT method and data mining regarding...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2021-11-23 | MSV000088434 | MassIVE

A system-wide quantitative map of RNA and protein subcellular localisation dynamics

PRJEB49479 | ENA

Alpha-mannosidosis: correlation between phenotype, genotype and mutant MAN2B1 subcellular localisation.

Not available

S-EPMC4465300 | biostudies-literature

Subcellular localisation and composition of intramuscular triacylglycerol influence insulin sensitivity in humans.

Not available

S-EPMC7718332 | biostudies-literature

Identifying protein subcellular localisation in scientific literature using bidirectional deep recurrent neural network.

Not available